Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16720 171 / 4e-51 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G15975 110 / 7e-29 RING/U-box superfamily protein (.1) AT2G47560 100 / 7e-25 RING/U-box superfamily protein (.1) AT3G62690 99 / 2e-24 ATL5 AtL5 (.1) AT1G72310 94 / 5e-22 ATL3 RING/U-box superfamily protein (.1) AT1G72200 93 / 3e-21 RING/U-box superfamily protein (.1) AT1G53820 91 / 1e-20 RING/U-box superfamily protein (.1) AT5G05280 87 / 2e-20 RING/U-box superfamily protein (.1) AT3G05200 90 / 3e-20 ATL6 RING/U-box superfamily protein (.1) AT2G42350 87 / 3e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037490 [exp] 445 / 8e-157 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10013618 [exp] 96 / 8e-23 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10015167 [exp] 95 / 3e-22 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10031515 [exp] 94 / 5e-22 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10004460 [exp] 92 / 7e-21 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10012745 [exp] 89 / 6e-20 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10034953 [exp] 88 / 2e-19 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10002194 [exp] 86 / 2e-19 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10030728 [exp] 85 / 2e-19 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219200 [exp] 221 / 4e-71 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.010G010500 [exp] 214 / 2e-68 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.009G073900 [exp] 105 / 6e-27 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.001G279200 [exp] 102 / 1e-25 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.019G091400 [exp] 97 / 2e-23 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.003G073300 [exp] 97 / 3e-23 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.001G162000 [exp] 94 / 2e-22 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 91 / 3e-21 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 89 / 4e-21 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 92 / 6e-21 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006493 pacid=23141651 polypeptide=Lus10006493 locus=Lus10006493.g ID=Lus10006493.BGIv1.0 annot-version=v1.0 ATGGATTCCGACCCCAAGGATACGAATCCAACCCCGTCCTTCGCCGACCGGAGCTACGCTCTCAGCGGGAGGATCATGCTCAGCGCAATCGTCGTCCTCT TCTTCGTCGTCATCGTTATGATCTGCCTCCACCTCTACGCCCGCTGGTACCTCCTCCGCGCTCGCCGTCGCCAGATGCGCCGTCGCAGCCGCCGCTCCGC CAACCTCGTCTTCTATGTAGATCCTGATACTGCTAACCTCACAACCACCGCCGCTTCCTCTCGCGGATTGGAGGCCTCTGTGCTTAAATCTCTTCCTGTG TTTGTCTACTCTGCCGATTTAGAATTCGAATCGATGGAGTGCGCTGTTTGTTTGTCCGAATTCGAGGAGAAGGAGAAAGGGCGGACTCTCCCGCAGTGTA AGCACAGCTTTCACACTGAGTGTATTGACATGTGGTTCCATTCTCACTCTACTTGTCCACTCTGCCGCTCGCCGGTTGAAGCGGTGGCTGTTAGTTCGGG TGTGGAGGTGGTTACTCCGTCAGATCTGTGCAATTCGTATGCGGACCATGTCGGTCCTTCCACGTCAGCGGAGTCTCGGGAAATGAGGAAGCCCGTGCGG GATCTGGATGGGAGAATTGACGTGCCGAGAAGGACCGGGAATTTCGGGGACGCGACGTCATCGTCTGCCGAGTCGCCGGCGAGTCAGGGGTTCAGGTCGC CGATGAGCCGGATGCTGTCGTTTACGAGGATTCTGAGCAGGGACTGGAGAGGGAATAATCTGTCCCCTCGATCTCCGATCCCGACTAGCTGCGGCGGTAC TTCGGCGGCTTTTGAGGATGGTGGGGTAGTAGACTTGGAGCGAGGTAAGGAGGCGGTGGAGACTCGGCCGAGTACGGCGAACGAGTTAGCGAGTTAG
AA sequence Show only first row Show all	>Lus10006493 pacid=23141651 polypeptide=Lus10006493 locus=Lus10006493.g ID=Lus10006493.BGIv1.0 annot-version=v1.0 MDSDPKDTNPTPSFADRSYALSGRIMLSAIVVLFFVVIVMICLHLYARWYLLRARRRQMRRRSRRSANLVFYVDPDTANLTTTAASSRGLEASVLKSLPV FVYSADLEFESMECAVCLSEFEEKEKGRTLPQCKHSFHTECIDMWFHSHSTCPLCRSPVEAVAVSSGVEVVTPSDLCNSYADHVGPSTSAESREMRKPVR DLDGRIDVPRRTGNFGDATSSSAESPASQGFRSPMSRMLSFTRILSRDWRGNNLSPRSPIPTSCGGTSAAFEDGGVVDLERGKEAVETRPSTANELAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10006493 [exp]	0	1
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	1.4	0.8706
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10029593 [exp]	1.4	0.8672
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	3.9	0.8523
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	4.6	0.8648
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	6.6	0.8337
AT4G32020			unknown protein		Lus10001936 [exp]	8.5	0.8639
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	12.7	0.8365
AT4G32020			unknown protein		Lus10001940 [exp]	12.7	0.8450
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	17.7	0.8034
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	19.7	0.8246

Compare expression of checked genes

Lus10006493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.