Plant FIBer expression Database

Lus10006494 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06840 89 / 3e-22 unknown protein
AT5G49170 84 / 3e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006495
[exp]
124 / 3e-36 AT5G49170 118 / 9e-34 unknown protein
Lus10022872
[exp]
74 / 6e-17 AT5G49170 97 / 6e-26 unknown protein
Lus10024954
[exp]
73 / 3e-16 AT5G49170 96 / 3e-25 unknown protein
Lus10036097
[exp]
71 / 2e-15 AT5G49170 97 / 2e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G219500
[exp]
105 / 8e-29 AT3G06840 136 / 1e-40 unknown protein
Potri.010G010600
[exp]
82 / 1e-19 AT3G06840 132 / 4e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10006494 pacid=23141647 polypeptide=Lus10006494 locus=Lus10006494.g ID=Lus10006494.BGIv1.0 annot-version=v1.0
ATGGCAAGCAAAACCAAATTCCCTGTTCCCGCATTGCCAGATGAGGAACATCAAGACTACTTCAGCGACTACGGCTTCGACCCTCAAATCCACTACTCCC
AGTTCTTGGAAGAAGCAAGGAAGCAAAGACTACAAAGAACAGACAGTTTCAGTACTAATCTACTGTACTCGAGGTTCCAGAAGCCCATCTCCAAAGATGA
CGACGAATCATTCAGTCACAAACTCAAAATGAAGAAGCAGCGATGGTGGAAGAACGCGCTCCTCTTCTTCAACAGAGGAAGAGAAAAACAAAATGTTGTT
GGTAATAAACCCAAGACAGTAAACGGGCTGGATTGGGCTTTACCCGGCCCAAATGGAGCGGCGTCAATGCCAGGGCCCGTCTACGTAACAGAGAGCCGGA
GGAGCGGGTCCAGCAGTACTCTGACAACCTCCAGGCGGCGGCCTAACTCCGGTCCGCTGCCCTACGTTAGCTTGAAGGGGCTTAATAACGTGGAGAAGCA
GCAGGAACAACAGAGGGTTTCGACCTCCGCCTTGCCCATCTACTTGGTCACCTGA
AA sequence
>Lus10006494 pacid=23141647 polypeptide=Lus10006494 locus=Lus10006494.g ID=Lus10006494.BGIv1.0 annot-version=v1.0
MASKTKFPVPALPDEEHQDYFSDYGFDPQIHYSQFLEEARKQRLQRTDSFSTNLLYSRFQKPISKDDDESFSHKLKMKKQRWWKNALLFFNRGREKQNVV
GNKPKTVNGLDWALPGPNGAASMPGPVYVTESRRSGSSSTLTTSRRRPNSGPLPYVSLKGLNNVEKQQEQQRVSTSALPIYLVT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06840 unknown protein Lus10006494
[exp]
0 1
AT4G32690 ATGLB3, GLB3 ARABIDOPSIS HEMOGLOBIN 3, hemo... Lus10007678
[exp]
10.3 0.7085
Lus10007780
[exp]
14.6 0.7085
AT3G50150 Plant protein of unknown funct... Lus10005799
[exp]
17.9 0.7085
AT3G51590 LTP12 lipid transfer protein 12 (.1) Lus10009630
[exp]
20.7 0.7085
Lus10011605
[exp]
23.1 0.7085
Lus10024141
[exp]
25.3 0.7085
Lus10025268
[exp]
27.4 0.7085
AT4G30380 EXLB2 Barwin-related endoglucanase (... Lus10026232
[exp]
29.3 0.7085
AT5G06720 ATPA2 peroxidase 2 (.1) Lus10027988
[exp]
31.0 0.7085
Lus10013255
[exp]
32.7 0.7085

Lus10006494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.