Plant FIBer expression Database

Lus10006495 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49170 106 / 4e-29 unknown protein
AT3G06840 98 / 9e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006494
[exp]
107 / 3e-29 AT3G06840 102 / 1e-27 unknown protein
Lus10024954
[exp]
80 / 6e-19 AT5G49170 96 / 3e-25 unknown protein
Lus10022872
[exp]
77 / 6e-18 AT5G49170 97 / 6e-26 unknown protein
Lus10036097
[exp]
69 / 6e-15 AT5G49170 97 / 2e-25 unknown protein
Lus10026782
[exp]
40 / 0.0001 ND 42 / 4e-06
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G219500
[exp]
127 / 2e-37 AT3G06840 136 / 1e-40 unknown protein
Potri.010G010600
[exp]
88 / 6e-22 AT3G06840 132 / 4e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10006495 pacid=23141636 polypeptide=Lus10006495 locus=Lus10006495.g ID=Lus10006495.BGIv1.0 annot-version=v1.0
ATGGCGACTAAAACCAAATCCCCTGTTTTCCCATTGCCGGACGACCATGAAGACCCCTTCACCGACTACGGCTTCGACCCTCAAATCCACTATTTCCAGT
TCTTGGAAGAAGCAAGGAATTACAAACCTCCACAAGCCATCACCGCTACTAATCTGCTCTTGAAGCTCCATAAGCCCATCGAACCACCAAAGACGAAAAT
CAAGAAGCAGAAGTGGTGGAAGAACGCGCTCCTCTTCTTCAACCTCAAGCGCGCTCCTCGTCGCCATCACCACCATCGCAGCGGTGAAGAGAAATTAGAG
GTTTATAAATCCAAGGCAGTACGAGAGGTTAGATCCGCTTCGTCAATGTCAGGACCCGTTTACATAACAGAGAGCCGGAGCGGGTCGAGCACTCCTTACA
GACGGACTTATTCCGGTCCGATTTCAGCCGGGACTCTGAGTTTGCCGTACGTTAGCCTTAAGGAGCTTAACATGGAGGTGGAGGGAGAACAGAGGGTTTC
TACATCCGCCTTGCCCATCTACTTGGTCACTTGA
AA sequence
>Lus10006495 pacid=23141636 polypeptide=Lus10006495 locus=Lus10006495.g ID=Lus10006495.BGIv1.0 annot-version=v1.0
MATKTKSPVFPLPDDHEDPFTDYGFDPQIHYFQFLEEARNYKPPQAITATNLLLKLHKPIEPPKTKIKKQKWWKNALLFFNLKRAPRRHHHHRSGEEKLE
VYKSKAVREVRSASSMSGPVYITESRSGSSTPYRRTYSGPISAGTLSLPYVSLKELNMEVEGEQRVSTSALPIYLVT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49170 unknown protein Lus10006495
[exp]
0 1
AT1G08750 Peptidase C13 family (.1.2.3) Lus10006570
[exp]
1.4 0.9016
AT1G05810 ARA, Ara-1, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Lus10025876
[exp]
3.6 0.9165
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10023212
[exp]
4.5 0.8821
AT2G01820 CYCJ18 Leucine-rich repeat protein ki... Lus10031944
[exp]
15.9 0.8493
AT1G72790 hydroxyproline-rich glycoprote... Lus10006024
[exp]
16.4 0.8647
AT3G06035 Glycoprotein membrane precurso... Lus10034054
[exp]
17.3 0.8754
AT1G54790 GDSL-like Lipase/Acylhydrolase... Lus10029980
[exp]
17.9 0.8893
AT1G29470 S-adenosyl-L-methionine-depend... Lus10018954
[exp]
18.6 0.8561
Lus10031697
[exp]
21.3 0.8156
AT4G19670 RING/U-box superfamily protein... Lus10040616
[exp]
28.0 0.8655

Lus10006495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.