Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15940 362 / 2e-128 Fumarylacetoacetate (FAA) hydrolase family (.1) AT3G16700 344 / 1e-121 Fumarylacetoacetate (FAA) hydrolase family (.1), Fumarylacetoacetate (FAA) hydrolase family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037490 [exp] 141 / 1e-39 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011000 [exp] 396 / 3e-141 AT4G15940 369 / 1e-130 Fumarylacetoacetate (FAA) hydrolase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0377 [flax] [poplar] FAH PF01557 [flax] [poplar] FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10006496 pacid=23141630 polypeptide=Lus10006496 locus=Lus10006496.g ID=Lus10006496.BGIv1.0 annot-version=v1.0 ATGGCGACGGCAGCTTTGGGACTCCAGAGGCTACTCCAAGTAGGTACGAAGATCGTTGGCGTCGGCCGTAACTACGCAGCTCATGCTAAAGAACTCGGCA ACGCCATCCCCAAGGAGCCGGTGCTGTTCCTGAAGCCTACTTCGTCCTACTTGAATAACGGAGGCACGATCGAGATTCCACATCCTCTGGAGTCGCTGCA TCACGAGGTGGAGCTCGCCGTCGTTATCAGCCAGAAAGCTCGCGATGTGCCCGAGGCTTCCGCCATGGATTATGTCGGAGGCTACGCTCTTGCGTTGGAT ATGACTGCAAGAGAAATCCAAGCTTCTGCTAAGACTGCAGGACTTCCATGGACTGTGGCCAAAGGCCAGGATACATTCACCCCTATTAGTTCCATTCTTC CGACATCAGCTATACCCGATCCTGATAATTTGGAGCTGTGGCTAAAGGTAGATGGGGAGATAAGACAGCAAGGCTCCACAAAAGATATGATGTTTAAGAT CCCATTTCTCATTAGCTACATTAGCTCAATCATGACGCTTCTTGAAGGAGATGTCATCTTAACAGGCACTCCTCCTGGTGTTAGTCCAGTAAAAGCTGGC CAGAAAGTAACTGCTGGGATAACTGGTCTTATCGATGTCCATTTCAACTGCGAAAAGCGTAAAAGGCCTGGAAATTTCTGA
AA sequence Show only first row Show all	>Lus10006496 pacid=23141630 polypeptide=Lus10006496 locus=Lus10006496.g ID=Lus10006496.BGIv1.0 annot-version=v1.0 MATAALGLQRLLQVGTKIVGVGRNYAAHAKELGNAIPKEPVLFLKPTSSYLNNGGTIEIPHPLESLHHEVELAVVISQKARDVPEASAMDYVGGYALALD MTAREIQASAKTAGLPWTVAKGQDTFTPISSILPTSAIPDPDNLELWLKVDGEIRQQGSTKDMMFKIPFLISYISSIMTLLEGDVILTGTPPGVSPVKAG QKVTAGITGLIDVHFNCEKRKRPGNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	0	1
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	1.0	0.9419
AT4G27130			Translation initiation factor ...		Lus10039660 [exp]	2.4	0.9356
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	4.2	0.9292
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10023138 [exp]	4.4	0.9169
AT2G32090			Lactoylglutathione lyase / gly...		Lus10006122 [exp]	6.2	0.9404
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	6.9	0.9345
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	7.3	0.9103
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	7.5	0.8944
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	8.0	0.9202
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	10.7	0.9134

Compare expression of checked genes

Lus10006496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.