Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39730 213 / 4e-71 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT2G22170 211 / 4e-70 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G65158 137 / 2e-42 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037491 [exp] 313 / 2e-110 AT2G22170 221 / 3e-74 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10009020 [exp] 175 / 8e-56 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076900 [exp] 218 / 4e-73 AT2G22170 214 / 6e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.005G077000 [exp] 211 / 2e-70 AT4G39730 218 / 3e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091000 [exp] 209 / 2e-69 AT2G22170 216 / 1e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091100 [exp] 206 / 1e-68 AT4G39730 200 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.003G107100 [exp] 172 / 9e-55 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10006497 pacid=23141624 polypeptide=Lus10006497 locus=Lus10006497.g ID=Lus10006497.BGIv1.0 annot-version=v1.0 ATGGCCTCTCGTCTTTTCCTTCTCTCCGCTCTACTCCTCCTCGCGATCTCCGTCGTCCCTTCCTCCGCCGATGATGACGAATGCGTTTTCACACTGTTCG TGAGGACCGGATCCATCTTCAAAGGAGGAACAGACTCGTTGATCGGCGCCAGGTTGTTCGACGAGAATGGCTACTACGTGGAGATCAAAGATCTGGTTGC TTGGGGAGGACTGATGGAAACGGGCCATAACTACTTCGAGAGGAGCAATCTGGACATCTTCAGCGGCAGGGCGCCTTGCCTGACCTCCCCGTTCTGCGCC TTGAACTTGACCTCTGATGGATCAGGGGCCCACCACGGCTGGTACTGCAACTACGTGGAGGCTACCTCCACCGGCGTCCACGGCTCCTGCTCACAGCAGC TATTCACCGTGGAGCAGTGGCTCGCTACAGATACCTCGCCCTACGAGCTTTCCGCGATCCGTAATTCTTGTCCCTACGATTTGGTTACCAAGGAGACTCG TCCGGTGACAGCCGCCGCCCGCAAGTCAGCGGCCTCCTCCTCCTTGATAAGAGAGGTCGTAGCGACTGCTTAG
AA sequence Show only first row Show all	>Lus10006497 pacid=23141624 polypeptide=Lus10006497 locus=Lus10006497.g ID=Lus10006497.BGIv1.0 annot-version=v1.0 MASRLFLLSALLLLAISVVPSSADDDECVFTLFVRTGSIFKGGTDSLIGARLFDENGYYVEIKDLVAWGGLMETGHNYFERSNLDIFSGRAPCLTSPFCA LNLTSDGSGAHHGWYCNYVEATSTGVHGSCSQQLFTVEQWLATDTSPYELSAIRNSCPYDLVTKETRPVTAAARKSAASSSLIREVVATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	0	1
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	3.9	0.7540
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	4.2	0.7788
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	9.2	0.7859
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10003330 [exp]	10.4	0.7169
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	12.7	0.8059
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	16.6	0.7838
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10015922 [exp]	16.6	0.7352
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10030348 [exp]	16.7	0.7086
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	18.2	0.7277
AT1G66080			unknown protein		Lus10010967 [exp]	21.2	0.7990

Compare expression of checked genes

Lus10006497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.