Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06850 557 / 0 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT3G13930 141 / 9e-36 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 140 / 1e-35 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G52200 130 / 8e-32 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G25860 103 / 2e-23 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT1G34430 101 / 1e-22 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT5G55070 96 / 9e-21 Dihydrolipoamide succinyltransferase (.1) AT4G26910 93 / 2e-20 Dihydrolipoamide succinyltransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037492 [exp] 920 / 0 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10006877 [exp] 144 / 3e-37 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 142 / 1e-35 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 138 / 2e-34 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 135 / 2e-33 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10032632 [exp] 103 / 2e-23 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043116 [exp] 102 / 9e-23 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043117 [exp] 102 / 1e-22 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10041467 [exp] 89 / 2e-18 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011300 [exp] 630 / 0 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.008G219700 [exp] 570 / 0 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.001G198000 [exp] 134 / 3e-33 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.003G043900 [exp] 133 / 5e-33 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 133 / 9e-33 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.013G114300 [exp] 110 / 1e-25 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 106 / 3e-24 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.014G154700 [exp] 105 / 5e-24 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.019G084900 [exp] 104 / 1e-23 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.011G089200 [exp] 103 / 3e-23 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0149 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10006498 pacid=23141639 polypeptide=Lus10006498 locus=Lus10006498.g ID=Lus10006498.BGIv1.0 annot-version=v1.0 ATGTGTAACTACATGTCCCAAACTGCAACCGGGCAGCTAGCTGGAGGTACGTGTCGCAACCAAAATGGAGTGACAGGTATCGTTGATTATAGACTGCTAT TTATATCTATCCAGCCACCCACCGCATGCTACCGAGCTCCCCCATTCAAGTCTCAAGATGAAAATGTTGTCATCTCATCAGCAACTTCTGCTAAAACCAG CTTGGCTTCCGGTCAAAATACCAGCAATCTTGAGCATCAGCTGTCAATAATTTGCGGTCAGCTTCCCCAGATCATGATTCCGATCAGGATACTGAGCCGG AGACGAGCTTTGTCCGTCTCGCGATTACTGAGCGGTTACACTCCTCATGCTGCTCTTCCTTATCCACCGCCGACCGCTGTCGTCGCTGGACACCACGAGC TTCCGTTCCACTCCCTCTTGTCTCAACTCGCTCGCTCAAGCCACACGTCAGCTTCGCTCGGATTTCCCCGCGACGGCTTCATTTCTATTCGACGGCGTTC CTTTTCCGGTGTTGCGGTGGCTGATCTTCCTAAGGAAGGGATAGTTGATGTGCCATTGGCGCAGACCGGCGAAGGTATTGCTGAATGCGAATTGCTTCAG TGGTTTGTTAAAGAGGGGGATGAAGTTGATGAGTTCCAGCCACGGTGTGAAGTCCAGAGTGACAAGGCTACCATTGAGATCACAAGCCGTTATAAAGGAA GAGTGTCTCAAATGCTCTATGTTCCTGGGGACATCGTTAAGGTTGGGGAAACTCTTGTGAAGATGCTTGTTGAGGATTCTCAGGTTCCTGTACAGTCAAC TGGGTCTCAGGTGAACAAGAATCTAGACAGCGAGACATTTAGGTCTGATTTGAACAGAAGTAGTAGTGGTGGAATCTTGTGCACACCAGCAGTGCGGCAC ATTGCTAAACAGTATGGCATCAGTCTAGATGACATCCAAGGATCTGGGAAAGCTGGGAGGGTGCTAAAAGAAGATGTTCTTAAATATGCTGTTCAGAAAG GAATCATCGAGTCTTCTGACACTCATTTGGGTGATGAGCTTCAGGAAGGAGAAGCACACGACAAACCTGGATTAGCTGAAATTGCCGACCACCCAAATGA TAAGAAGGTTACCTTAAGGGGATTCCAGAGGGCAATGGTGAAGACAATGACCATGGCTTCCAAAGTTCCACATTTTTATTACGTGGAGGAGATTATTTGT GATGCATTAGTGGAACTCAAGGCCGCATTCCAAAAGAATACAATTGATCCAGCCATTAAGCATACATTTCTTCCATTATTGATCAAGTCTCTCTCGTCAA CCCTCAGCCAATACCCTTTGGTTAATAGTTGTTTCAACGAGGATGCAATGGAGGTCATACTAAAAGGTTCTCACAATATTGGAATTGCCATGGCTACTCC GTCTGGTCTAGTGGTACCAAACATAAAGAATGTTCAGTCTCTTTCGATCCTGGAGATAACCATGGAAGTCTCGCGCTTACAACAGTTGGCAGTGGCTAAC AAGCTTAGCCCCGAGGATATAACCGGCGGCACAGTGACTTTGAGTAACATTGGTGCAATTGGCGGGAAGTTCGGCTCTCCCCTCCTCAATCTACCTGAAG TCGCCATCATTGCCATGGGCCGAATCCAGAAAGTCCCCCGTTTCGACAAAACTGGGAACGTCTACCCTGCATCAATCATGACTGTAAATATAGGAGCAGA TCACAGAGTTCTGGATGGGGCTACAGTCGCAAGATTCTGCACTGAGTGGAAACAGCTTATTGAAAAACCTGAACTGTTCATGCTGCAACTCAGATGA
AA sequence Show only first row Show all	>Lus10006498 pacid=23141639 polypeptide=Lus10006498 locus=Lus10006498.g ID=Lus10006498.BGIv1.0 annot-version=v1.0 MCNYMSQTATGQLAGGTCRNQNGVTGIVDYRLLFISIQPPTACYRAPPFKSQDENVVISSATSAKTSLASGQNTSNLEHQLSIICGQLPQIMIPIRILSR RRALSVSRLLSGYTPHAALPYPPPTAVVAGHHELPFHSLLSQLARSSHTSASLGFPRDGFISIRRRSFSGVAVADLPKEGIVDVPLAQTGEGIAECELLQ WFVKEGDEVDEFQPRCEVQSDKATIEITSRYKGRVSQMLYVPGDIVKVGETLVKMLVEDSQVPVQSTGSQVNKNLDSETFRSDLNRSSSGGILCTPAVRH IAKQYGISLDDIQGSGKAGRVLKEDVLKYAVQKGIIESSDTHLGDELQEGEAHDKPGLAEIADHPNDKKVTLRGFQRAMVKTMTMASKVPHFYYVEEIIC DALVELKAAFQKNTIDPAIKHTFLPLLIKSLSSTLSQYPLVNSCFNEDAMEVILKGSHNIGIAMATPSGLVVPNIKNVQSLSILEITMEVSRLQQLAVAN KLSPEDITGGTVTLSNIGAIGGKFGSPLLNLPEVAIIAMGRIQKVPRFDKTGNVYPASIMTVNIGADHRVLDGATVARFCTEWKQLIEKPELFMLQLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	0	1
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	1.0	0.9881
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	1.4	0.9862
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	2.8	0.9834
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	3.5	0.9850
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	4.2	0.9813
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	4.4	0.9753
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	4.5	0.9751
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	4.5	0.9816
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	4.7	0.9786
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	4.9	0.9796

Compare expression of checked genes

Lus10006498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.