Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49120 73 / 5e-17 Protein of unknown function (DUF581) (.1) AT1G78020 59 / 2e-11 Protein of unknown function (DUF581) (.1) AT4G39795 58 / 2e-11 Protein of unknown function (DUF581) (.1) AT1G22160 56 / 1e-10 Protein of unknown function (DUF581) (.1) AT4G17670 52 / 8e-09 Protein of unknown function (DUF581) (.1) AT5G47060 52 / 8e-09 Protein of unknown function (DUF581) (.1) AT1G53903 51 / 9e-09 Protein of unknown function (DUF581) (.1) AT1G53885 51 / 9e-09 Protein of unknown function (DUF581) (.1) AT5G20700 52 / 1e-08 Protein of unknown function (DUF581) (.1) AT5G65040 50 / 1e-08 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037493 [exp] 170 / 7e-55 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 59 / 3e-11 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 58 / 3e-11 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10003939 [exp] 54 / 2e-09 AT1G53903 60 / 1e-11 Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 51 / 1e-08 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 52 / 2e-08 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 51 / 2e-08 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 50 / 5e-08 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 50 / 6e-08 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011700 [exp] 87 / 2e-22 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 77 / 2e-18 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 64 / 2e-13 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 63 / 4e-13 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 57 / 1e-10 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.018G146800 [exp] 57 / 3e-10 AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1) Potri.006G078300 [exp] 56 / 5e-10 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 56 / 2e-09 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 55 / 2e-09 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.007G089200 [exp] 54 / 2e-09 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10006499 pacid=23141645 polypeptide=Lus10006499 locus=Lus10006499.g ID=Lus10006499.BGIv1.0 annot-version=v1.0 ATGGTGGGATTGAGCATCGTCTTGGATCACCCCCACCGCAAAACCACCACTCAAGTCTTCAACAAATCCTCCTTGATCGCCGCCGACCGGAGCAAGCTTC ATCATTTGATGATCTCTTCTTCTCACCCTCCTTCTCCGTCGTCAGGATTTCTGGATCTCTGTTTTTTCTGCGGCGGGAAACTTCTTCCTGGCATGGACAT CTACATGTACAAGGGGGACAGAGCATTTTGTAGCGTGGAGTGCAGGGACAAGCATATGAACATGGACGACGAGCAGGAGACCGCCGTGACGACGACGAAG AAGAAGAAGAAGCATCAGTACTGTGCGTTTTCCGCTTCCACTATAACAGCTGCGGCGGCGGGGGGGGGGGGGGACGGTGGTGGCGGTGGTTCTTCCGCTT CTCCGGCGGCTGATAGCGGGAGTCACCGGAAGAGCGGGAGAGGCGGCGGTTTTGTTTACTAG
AA sequence Show only first row Show all	>Lus10006499 pacid=23141645 polypeptide=Lus10006499 locus=Lus10006499.g ID=Lus10006499.BGIv1.0 annot-version=v1.0 MVGLSIVLDHPHRKTTTQVFNKSSLIAADRSKLHHLMISSSHPPSPSSGFLDLCFFCGGKLLPGMDIYMYKGDRAFCSVECRDKHMNMDDEQETAVTTTK KKKKHQYCAFSASTITAAAAGGGGDGGGGGSSASPAADSGSHRKSGRGGGFVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	0	1
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	2.4	0.8740
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10028997 [exp]	2.8	0.8476
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	3.5	0.8346
AT1G58330		ZW2	transcription factor-related (...		Lus10027812 [exp]	3.9	0.8517
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	6.3	0.8444
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	6.8	0.8652
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	9.4	0.7957
AT5G47830			unknown protein		Lus10024804 [exp]	11.7	0.7865
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	12.8	0.7866
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	13.7	0.8165

Compare expression of checked genes

Lus10006499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.