Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06860 496 / 6e-172 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 381 / 7e-127 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT4G16210 81 / 3e-17 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT4G16800 76 / 3e-15 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 74 / 4e-15 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT1G60550 49 / 2e-06 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037495 [exp] 680 / 0 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10043224 [exp] 380 / 3e-126 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10011102 [exp] 365 / 2e-118 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10016920 [exp] 79 / 3e-16 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10010994 [exp] 77 / 2e-15 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10011336 [exp] 74 / 1e-14 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10037777 [exp] 72 / 1e-13 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10002583 [exp] 67 / 2e-12 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10013023 [exp] 49 / 3e-06 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011900 [exp] 582 / 0 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.008G220400 [exp] 544 / 0 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 383 / 1e-127 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.008G104500 [exp] 79 / 1e-16 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G146400 [exp] 78 / 3e-16 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G153300 [exp] 75 / 7e-15 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.003G080800 [exp] 69 / 7e-13 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 67 / 2e-12 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.001G329900 [exp] 42 / 0.0004 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase CL0063 [flax] [poplar] NADP_Rossmann PF02737 [flax] [poplar] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10006501 pacid=23141637 polypeptide=Lus10006501 locus=Lus10006501.g ID=Lus10006501.BGIv1.0 annot-version=v1.0 ATGGCGAAAGGAGCGACGACGATTGAGGTTGGAGCTGACGGAGTTGCCATCATCACCATCATCAATCCTCCCGTCAATTCCCTCTCCTTTGATGTGTTGT ACAGCTTGAAAGAAAGTTATGATCAGGCACTACGAAGAGATGATGTGAAGGCAATAGTTGTTACCGGTGCAAACGGAAAATTCTCGGGTGGATTTGATAT CAGTGCATTTGGCGGAGTTCAAACTGGAAAGGTGGACCAACCAAAGCCTGGTTACATATCAGTGGAGGTACTGACTGATACTGTTGAAGCTGCAAGAAAG CCTTCTATTGCTGCAATTGATGGCCTTGCCTTGGGTGGAGGATTGGAGGTGGCAATGGCTTGCCATGCTCGAATCTCAACCCCCACAGCACAATTGGGCT TGCCTGAACTTCAACTAGGAATAATTCCTGGATTTGGAGGTACACAGAGACTTCCACGTCTTGTAGGGATCTCAAAGGCTCTTGAAATGATGCTGACATC TAAACCGGTGAAAGGAACTGAAGCTCATGGTTTAGGCCTTGTGGATAGTCTAGTTTCTCCTAATGAGTTGGTCACCGTTGCTCGCCGCTGGGCCTTAGAC ATGTTGGAGGGCAAGAAACCATGGGTTCCTAGCCTTTACAAGACAGATAAGTTGGATCCGCTGGGAGAGGCAAGGGAGATATTCAAATTTGTAAGAGCAC AAGTCCGAAGACAAGCGCCCAACCTTACACATCCTTTAGTTTGCATTGATGTTGTGGAAGAAGGCATAGTTTCTGGTGGAAGGGCTGGATTGTGGAAGGA ATTTGAATCCTTCCAAGAACTTGTGCGTGCTGACACATGCAAGAGCCTGGTCCACATCTTCTTTGCTCAGCGTGGAACAACTAAGGTTCCTGGAGTCACA GACCTGGGACTAAAGCCGAGACGAGTGAATAAGGTTGCTGTACTTGGTGGAGGGCTGATGGGTTCCGGAATAGCTACTGCATTAGTCCTGTGTGGTTATC CTGTTATCTTGAAAGAAATAAATGAGAAGTTCTTGCAAGCTGGGATTGATAGAGTCAAAGGCGAGACAAACCTTTTTGAACATTTTATCTCTAGTTACGT GAATGAAGTTTAG
AA sequence Show only first row Show all	>Lus10006501 pacid=23141637 polypeptide=Lus10006501 locus=Lus10006501.g ID=Lus10006501.BGIv1.0 annot-version=v1.0 MAKGATTIEVGADGVAIITIINPPVNSLSFDVLYSLKESYDQALRRDDVKAIVVTGANGKFSGGFDISAFGGVQTGKVDQPKPGYISVEVLTDTVEAARK PSIAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGISKALEMMLTSKPVKGTEAHGLGLVDSLVSPNELVTVARRWALD MLEGKKPWVPSLYKTDKLDPLGEAREIFKFVRAQVRRQAPNLTHPLVCIDVVEEGIVSGGRAGLWKEFESFQELVRADTCKSLVHIFFAQRGTTKVPGVT DLGLKPRRVNKVAVLGGGLMGSGIATALVLCGYPVILKEINEKFLQAGIDRVKGETNLFEHFISSYVNEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006501 [exp]	0	1
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10028030 [exp]	6.9	0.8990
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	7.5	0.9144
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	8.5	0.8909
AT2G14095			unknown protein		Lus10035649 [exp]	12.0	0.8921
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	18.8	0.9055
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	21.9	0.8708
AT2G01300			unknown protein		Lus10004062 [exp]	23.7	0.8858
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	27.7	0.8917
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	29.8	0.8747
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	34.9	0.8784

Compare expression of checked genes

Lus10006501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.