Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06860 669 / 0 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 440 / 6e-150 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G15290 107 / 2e-26 3-hydroxyacyl-CoA dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037495 [exp] 755 / 0 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10011102 [exp] 460 / 7e-155 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10043224 [exp] 451 / 7e-154 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10020828 [exp] 117 / 3e-30 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10012681 [exp] 111 / 5e-28 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011900 [exp] 699 / 0 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.008G220400 [exp] 692 / 0 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 473 / 1e-162 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.001G398600 [exp] 109 / 3e-27 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00725 [flax] [poplar] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF02737 [flax] [poplar] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10006502 pacid=23141628 polypeptide=Lus10006502 locus=Lus10006502.g ID=Lus10006502.BGIv1.0 annot-version=v1.0 ATGAACATTCTCTCTTGTGTAGCCAATTTGCAGAGCCGAGTCAAGAAAGGGAAAATGACCCAGGAAAAGTTTGAGAAAACCCTGTCTCTTCTTAAGGGTT CTCTTGACTACGAAAGCTTTAGGGATGTGGACATGGTCATAGAGGCTGTCATCGAAAATGTCTCGTTGAAGCAACAAATCTTTGCGGACCTCGAGAAGTA CTGCCCACCCCATTGCATACTTTCGAGCAACACTTCCACAATCGATTTGAACTTGGTGGGAAGTAAGACAAAGTCTCATGATAGGATTATTGGAGCCCAT TTCTTTAGTCCGGCTCATATCATGCCACTCCTGGAAATTGTTCGCACCAATAAGACTTCTCCCCAGGTAATTGTTGATCTCCTAGAGGTCGGGAAAAAGA TAAGGAAGACCCCAGTTGTCGTTGGGAACTGTACTGGGTTTGCAGTCAACAGGATGTTCTTCCCTTACACACAAGCTGCTCTTTTGCTTGTTGAGCACGG AACAGATCTTTATCTCATTGATAAAGCTATCACAAAATTTGGAATGCCAATGGGCCCATTCCGGTTGGTTGATTTAGTGGGTTTTGGTGTCGGAGTTGCA ACTGCCATGCAGTTTATTGAAAATTTCCCAGAGCGGACCTATAAGTCTATGCTTATCCCTATAATGCAAGAGGATAAGAGAGCAGGTGAAACTACTCGCA AAGGATTCTATCTCTATGATGATAAGCGTAAAGCACGTCCAGATCCTGAAATAAAGAAATACATTGAGAAGTCGAGAAGCATCTCTGGAGTCTCAATTGA CCCAAAGATGGCCAAATTATCCGAGAAGGACATCATCGAAATGGTATTCTTCCCAGTGGTTAACGAGGCCTGCCGAGTTTTTGCTGAAGGCATCGCAGTC AAAGCTGCGGATCTCGACATTTCATCTGTTATGGGAATGGGTTTCCCTCCTTACAGGGGTGGCATCATGTTCTGGGCGGATTCGCTAGGATCCAAGTACA TAAACTCAAGATTGGAGGAGTGGTCCAAGACATTCGGGGACTTCTTCAAGCCCTGTGCTTTCTTGGCTGAAAGAGCTGCTAAGGATGCTCCTCTGAGTGC CCCGGTGGAGCAAGCCAAGTCTCGGTTGTAG
AA sequence Show only first row Show all	>Lus10006502 pacid=23141628 polypeptide=Lus10006502 locus=Lus10006502.g ID=Lus10006502.BGIv1.0 annot-version=v1.0 MNILSCVANLQSRVKKGKMTQEKFEKTLSLLKGSLDYESFRDVDMVIEAVIENVSLKQQIFADLEKYCPPHCILSSNTSTIDLNLVGSKTKSHDRIIGAH FFSPAHIMPLLEIVRTNKTSPQVIVDLLEVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAALLLVEHGTDLYLIDKAITKFGMPMGPFRLVDLVGFGVGVA TAMQFIENFPERTYKSMLIPIMQEDKRAGETTRKGFYLYDDKRKARPDPEIKKYIEKSRSISGVSIDPKMAKLSEKDIIEMVFFPVVNEACRVFAEGIAV KAADLDISSVMGMGFPPYRGGIMFWADSLGSKYINSRLEEWSKTFGDFFKPCAFLAERAAKDAPLSAPVEQAKSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	0	1
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	3.5	0.9670
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	5.7	0.9598
AT1G19530			unknown protein		Lus10002540 [exp]	6.0	0.9614
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	6.3	0.9597
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10017995 [exp]	8.4	0.9508
AT5G24890			unknown protein		Lus10009793 [exp]	9.4	0.9553
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	11.5	0.9612
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	12.6	0.9569
AT2G46150			Late embryogenesis abundant (L...		Lus10007904 [exp]	13.4	0.9305
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	14.5	0.9579

Compare expression of checked genes

Lus10006502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.