Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49100 119 / 2e-29 unknown protein AT3G06868 97 / 5e-22 unknown protein AT3G06870 69 / 2e-13 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037496 [exp] 498 / 3e-175 AT5G49100 216 / 6e-66 unknown protein Lus10024784 [exp] 103 / 7e-24 AT3G06868 190 / 1e-56 unknown protein Lus10001474 [exp] 96 / 3e-21 AT3G06868 194 / 1e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012000 [exp] 234 / 1e-72 AT5G49100 140 / 1e-37 unknown protein Potri.008G220700 [exp] 198 / 6e-59 AT3G06868 155 / 1e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006504 pacid=23141631 polypeptide=Lus10006504 locus=Lus10006504.g ID=Lus10006504.BGIv1.0 annot-version=v1.0 ATGGCCGGAGAAGCGCCGCCGAAGGGCGCCGCCGACGATGACATGGGAGACGGGATGCAATGCAGCAACCATCCTTACACTAGCAACCCCGGCGGGATCT GCGCCTTCTGCCTCCAGGAAAAGCTCGGCAAGCTCGTTTCATCTTCCTCCTCATCCTCCTTCCCACTCTCCGCTCCTTCCTCCTCCTCTTCTCCGCCTTC CTTCAGATCTGACCCCCTCCGGCTCAACAACTCCAACGCAGCTTCCGCCGCTGCCACCTCTCTTTCACTCTCTGTGCGTCCATGCCCGCAAGGTGTTCGA CGAAATGACTCAATGAATAATGGTAGTAATAATAACACTACTAATAATAGCAGTGGCCAGCAGTATAATGAGCAGCACTACAGCAAGGCGAAGATCCCGT TCCTCCTGGCGAGGAGGAAGAAGAAGATCATGGCCGCTTCCTCCTCGTCGAATTCTTCGTCGGAGAATCGCGACGTCGTCTTTAAGCGGAGTAAGTCGAC TGCTGCTCCAGGGAGGAGGTCGTCTGGCCATTTCTTCAACGATGACACCGATGATTTCAGCCCCAGGAAGCGCCGCGGTGGATTCTGGTCGTTTCTGTAC CACTCTGCTTCTTCCAATTCCAAATCCAATAGCAACATCGGTAACAGAATCGATCATCACAAGGTCTCATCGCATCCAGCAAATGTTTCTTCTTCTTCCA GCTCTCCTTCTGCTGCCAACAACGCTATGAAGAAGGAAAGGTGTTTAGGAGGATCAAATCTCTCCAGGAGAACAGAAATGGTGGCTGTGGAAGAAGAAAA AGAGGATCAGGAAGAAGAAGAGAGTCCAAATGCCGACTCTGTCACCAACTCTGCTGGTTCGTCATTCGAGAGGAAAGTTTCGAGATCCAGATCCGTAGGA TGTGGGAGCAGGAGCTTTTCAGGGGATTTGTTCGAGAAGTTATCTACTGGATTTGGCGATTGCGCGCTGAGGAGAGTGGAGTCACAGAGGGAAGGAGGCA AGCACAGAGTGTCATCAGGGATGAAAGATCGAGTCAAGTGTGGTGGAATCTTTGGTGGATTCATCATAACCTCATCGTCTTCATCATCTTCTTCAGCATA TTTTATTTCCGAAGAGATGAGTGGGAAATCAGGAGCAGCAGCTGCTGCTACCGGCGGTGGAAATCTTTCCGCTGCACATGGAAGGACAAGGAGCTGGACT TGGGCATTCGCTAGCCCCATGAGAGCTTTCAACAGCAAGCCGGTGTCTACTGCAGGTAAAGATGGGAAGAGGGAGAGTACTGGGAATAATAAGAACTCTG CTCCAAACTTGGCTGCCATTCCTTCTTTGCTAACTGTGAACAGCTAG
AA sequence Show only first row Show all	>Lus10006504 pacid=23141631 polypeptide=Lus10006504 locus=Lus10006504.g ID=Lus10006504.BGIv1.0 annot-version=v1.0 MAGEAPPKGAADDDMGDGMQCSNHPYTSNPGGICAFCLQEKLGKLVSSSSSSSFPLSAPSSSSSPPSFRSDPLRLNNSNAASAAATSLSLSVRPCPQGVR RNDSMNNGSNNNTTNNSSGQQYNEQHYSKAKIPFLLARRKKKIMAASSSSNSSSENRDVVFKRSKSTAAPGRRSSGHFFNDDTDDFSPRKRRGGFWSFLY HSASSNSKSNSNIGNRIDHHKVSSHPANVSSSSSSPSAANNAMKKERCLGGSNLSRRTEMVAVEEEKEDQEEEESPNADSVTNSAGSSFERKVSRSRSVG CGSRSFSGDLFEKLSTGFGDCALRRVESQREGGKHRVSSGMKDRVKCGGIFGGFIITSSSSSSSSAYFISEEMSGKSGAAAAATGGGNLSAAHGRTRSWT WAFASPMRAFNSKPVSTAGKDGKRESTGNNKNSAPNLAAIPSLLTVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49100			unknown protein		Lus10006504 [exp]	0	1
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	2.2	0.7874
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	6.2	0.8133
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	7.7	0.7878
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	9.2	0.7951
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	9.9	0.7778
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	12.2	0.7812
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	13.0	0.7655
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	13.9	0.7387
AT4G03010			RNI-like superfamily protein (...		Lus10042681 [exp]	14.3	0.8012
AT5G58900	MYB		Homeodomain-like transcription...		Lus10040696 [exp]	14.7	0.7612

Compare expression of checked genes

Lus10006504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.