Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04160 694 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 683 / 0 ATSBT5.4 Subtilase family protein (.1) AT3G14067 530 / 5e-178 Subtilase family protein (.1) AT5G67360 524 / 3e-176 ARA12 Subtilase family protein (.1) AT5G45650 507 / 5e-169 subtilase family protein (.1) AT4G10520 490 / 7e-163 Subtilase family protein (.1) AT4G34980 487 / 8e-162 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 486 / 3e-161 Subtilase family protein (.1) AT4G10550 475 / 9e-157 Subtilase family protein (.1.2.3) AT1G04110 473 / 3e-156 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023048 [exp] 961 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10014591 [exp] 814 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032425 [exp] 770 / 0 AT5G59810 607 / 0.0 Subtilase family protein (.1) Lus10032096 [exp] 734 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Lus10016064 [exp] 716 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039087 [exp] 666 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 658 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 655 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 655 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050000 [exp] 867 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 858 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 854 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 801 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 798 / 0 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 795 / 0 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 731 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 726 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 699 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.001G469000 [exp] 688 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006505 pacid=23141644 polypeptide=Lus10006505 locus=Lus10006505.g ID=Lus10006505.BGIv1.0 annot-version=v1.0 ATGAGACAATCCACTGCAGTTCTGCTGCTGCTGTCTCTTCTCTGTTTCCAGCTCCTTCAAGTACTAGCTGCCAAAAAGTCATATGTAGTGTATCTTGGGA GGAATTCTCATGGATCTAAAGAAACTTCATTGGCTGGTGCTGAAATGAGTGGAGCATACCATAAGTTGTTGGCTTCTTGCATCAAGAGCAAGGACAAGGC AAAAGAAGCCATATTCTATTCATACTCCAGCCATATCAATGCCTTTGCAGCAACCCTTGAAGATGAACAAGTTGCTCAACTCTCAAGTCACCCTGAAGTT GTATCAGTGTTGGGCAACGAAGAGTACGAGTTGCAAACCACAAGGACATGGGAATTCATGGGAATGGAAGGCCGTGGAGGGGAAATCTCAGATGATTCAA TTTGGAAAAAGGCAAAGTTCGGTGAGGATGTCATCATTGCAAATCTGGACACAGGGGTTTGGCCAGAGTCGCTAAGTTTTGATTGCAGTGATACGCTTGA TGCTGTTCCTTCCAGGTGGAAAGGTGGATGTGAAGATGCCAGTGGTGGATTCAAATGCAACGGAAAACTGATTGGAGCTAAATTTTTCAACAAGGGCAAC AAAGCAGCAACAGGACACAATAACCAGCTTGATGCCGATGCATCCTTGTCAGCAAGAGACACAGTTGGTCACGGAACTCACACCCTATCGACAGCAGGAG GTTGCTTTGTTCCGGGCGCAAACTTGTTCGGATCAGCTAATGGAACAGCAAAAGGCGGATCTCCAAAGGCGAGAGTTGCAACCTACAAAGTATGCTGGCC AGGATGCTTTGCTGCTGACATTCTGGCTGCGTTTGATGCCGCCATCCAGGACGGAGTCGACATCTTGTCTCTTTCTCTCGGAAGCACTACTTCTCGACCT TACGATTCCGACACCATTGCAATCGGCTCGTTCCATGCTGTCAAAAATGGGATCACCGTAGTTTGTTCCGCTGGGAATTCCGGACCCTATCCTTCCTCCG TTACCAATGTAGCTCCTTGGATTCTTACTGTTGCTGCCAGCACGGTCGACCGCCGGTTTCTGTCCAACGTCACTCTCGAAAACGGGCAACGATTCACGGG ATTCAGCTTCAATGCCAATTCCTTGCCAGCTGGACAGTTTTATCCTCTCATCACAGGAATTGATGCCAAGTCCTCCGATGCTGAGGATTCCGACGCCAAG TACTGCTTCCCGGAAGCACTCGATGCGAGTAAGGTGGAGGGGAAGATTGTGTTGTGCCAGCGTGGCGGGTCGGATGTCGAAAAGAGCCAAGGGATTTTGC AAGCCCGTGGAGTTGGAATGATCTTAGCAAATTCATTCTCCGGATCCATTTCTCCTCAAGCTCACTTTGTTCCCACTTCAATGGTCTCCAAGGATGATGG CGATTCCATTGCATCCTACATCTCTACTGCATCTTCACCTGAAGCTTATATAAGCGGCGGTACAGAGACCGGAGTAGCCGTTGCACCTATAATGGCTTCC TTCTCGTCACTAGGACCTAACCGACTCACACCACACATCATGAAGCCAGATATAACAGCACCTGGTGTGTACATACTAGCTGCATACACAGAAGCAAAAG GACCCGGTGGAGATTCCGACAGTCGTCGTGTGCCCTTCAACATCATATCGGGAACTTCGATGTCGTGTCCTCATATCACCGGAATCGCCGGCCTTCTGAA AACGATCCATCCTGACTGGAGCTCTGCCGCCGTCAAATCCGCCATCATGACCACTGCTACAACAACGAGCAACACCGGAGAAGAAATCCTGACGGCATCA GGAAATAGAGCAAACTCTTTTAATTACGGAGCAGGACATGTCAGGCCTAACAAGGCAATGGATCCAGGGTTGGTTTACGACTCGAACCTGACCGACTACC TCAACTTCTTGTGTTACATTGGCTACAATGCTCAACAGATCTCCATGTTCTATGATAAGTCATACGAGTGTCCATCGAAGAGTAATACAACGAGCTTGTT GAATATTAACCAACCGGCCATTACCGTGCCTGACCTATCGGGGGAGGTTGTGGTGAGTCGAACCGTGAAAAACGTAGGAAGTCCGGGTAAGTACGCGGTT AGTGTTCGAGCACCAAAGGGAATCTCGGTTGGGGTTGAGCCGGGAAGTTTGGTGTTTGAGAAGATGAATGAAGAGAAGAGCTTCCAAGTTACATTGAAGG AGGAGGTGAACACAGGGAGTGAGTATGTGTTTGGAGAGCTTGTTTGGTCAGATGGGGTGCACAATGTCGCAAGTCCTATCACAGTAAGAAGCGATGGAAA CAAAATTCAACTAATGTAG
AA sequence Show only first row Show all	>Lus10006505 pacid=23141644 polypeptide=Lus10006505 locus=Lus10006505.g ID=Lus10006505.BGIv1.0 annot-version=v1.0 MRQSTAVLLLLSLLCFQLLQVLAAKKSYVVYLGRNSHGSKETSLAGAEMSGAYHKLLASCIKSKDKAKEAIFYSYSSHINAFAATLEDEQVAQLSSHPEV VSVLGNEEYELQTTRTWEFMGMEGRGGEISDDSIWKKAKFGEDVIIANLDTGVWPESLSFDCSDTLDAVPSRWKGGCEDASGGFKCNGKLIGAKFFNKGN KAATGHNNQLDADASLSARDTVGHGTHTLSTAGGCFVPGANLFGSANGTAKGGSPKARVATYKVCWPGCFAADILAAFDAAIQDGVDILSLSLGSTTSRP YDSDTIAIGSFHAVKNGITVVCSAGNSGPYPSSVTNVAPWILTVAASTVDRRFLSNVTLENGQRFTGFSFNANSLPAGQFYPLITGIDAKSSDAEDSDAK YCFPEALDASKVEGKIVLCQRGGSDVEKSQGILQARGVGMILANSFSGSISPQAHFVPTSMVSKDDGDSIASYISTASSPEAYISGGTETGVAVAPIMAS FSSLGPNRLTPHIMKPDITAPGVYILAAYTEAKGPGGDSDSRRVPFNIISGTSMSCPHITGIAGLLKTIHPDWSSAAVKSAIMTTATTTSNTGEEILTAS GNRANSFNYGAGHVRPNKAMDPGLVYDSNLTDYLNFLCYIGYNAQQISMFYDKSYECPSKSNTTSLLNINQPAITVPDLSGEVVVSRTVKNVGSPGKYAV SVRAPKGISVGVEPGSLVFEKMNEEKSFQVTLKEEVNTGSEYVFGELVWSDGVHNVASPITVRSDGNKIQLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	0	1
AT2G14095			unknown protein		Lus10035649 [exp]	2.8	0.9397
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037661 [exp]	3.5	0.9211
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	4.7	0.9350
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	6.7	0.9210
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	7.1	0.9293
AT3G02430			Protein of unknown function (D...		Lus10036581 [exp]	7.3	0.9045
AT2G01300			unknown protein		Lus10002277 [exp]	8.7	0.8818
AT2G16980			Major facilitator superfamily ...		Lus10005626 [exp]	10.6	0.8851
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	10.9	0.9086
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	11.0	0.8974

Compare expression of checked genes

Lus10006505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.