Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20800 144 / 1e-40 FAD-binding Berberine family protein (.1) AT1G26420 140 / 1e-39 FAD-binding Berberine family protein (.1) AT1G26390 140 / 2e-39 FAD-binding Berberine family protein (.1) AT1G26380 138 / 1e-38 FAD-binding Berberine family protein (.1) AT1G30760 134 / 6e-37 FAD-binding Berberine family protein (.1) AT5G44380 132 / 1e-36 FAD-binding Berberine family protein (.1) AT5G44400 130 / 2e-35 FAD-binding Berberine family protein (.1) AT1G34575 129 / 2e-35 FAD-binding Berberine family protein (.1) AT1G26410 129 / 4e-35 FAD-binding Berberine family protein (.1) AT1G30710 128 / 5e-35 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021289 [exp] 259 / 1e-84 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10023374 [exp] 253 / 2e-82 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 252 / 4e-82 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10023373 [exp] 139 / 8e-41 AT1G34575 283 / 2e-92 FAD-binding Berberine family protein (.1) Lus10038445 [exp] 136 / 5e-38 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 135 / 2e-37 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023366 [exp] 126 / 6e-35 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 128 / 8e-35 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 127 / 2e-34 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459100 [exp] 165 / 8e-49 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 162 / 2e-47 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 162 / 2e-47 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 159 / 2e-46 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 157 / 7e-46 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462532 [exp] 140 / 1e-41 AT1G30700 306 / 5e-102 FAD-binding Berberine family protein (.1) Potri.011G160400 [exp] 145 / 3e-41 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159200 [exp] 145 / 3e-41 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159100 [exp] 145 / 3e-41 AT5G44400 614 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 140 / 1e-39 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10006507 pacid=23141640 polypeptide=Lus10006507 locus=Lus10006507.g ID=Lus10006507.BGIv1.0 annot-version=v1.0 ATGCTTCTGACGAGCCCACTTGAGTTGTTGAATAGGAAATCCATACTCGGATATTTCAAGAGTAAATCTGATTACGTGACGGATGTGATTCCTACGGAAG CGTTACCGGGTATATGGAACGCAATTCTGAAAACTGGCGGCACTTTCACGCAGTGGAATCCTTACAGTGGGAGGATGGCAGAGATTCTTATAGACGAGAC AGCATATGGTCATAGATCTGGGTATTTTTTCAAAGTGCAATATTATTTGGGTTGGGCGGAAGACGGAGAAGAAGCAGAAGCGGAACACATTGATGCGCTG ACAGCATTACATGACGTTGTGACTCCATACGTGACCAAGGAGCCGATAGAGGCGTTTTTCAATTACAGGGATCTTGCCAATGGGAAAAACTCTGTTGATA AGCCCGACTGGGAGAAGGCTAAAGTTTATGGGGAGAAGTATTTCAAGAGTCATTTTAAAAGGTTATCGAAAATTAAACCTCAATTTGATCGTGATAATTT CTTTAGGAATCAGCAAAGCATTCCTCCATTCCCAATTTGA
AA sequence Show only first row Show all	>Lus10006507 pacid=23141640 polypeptide=Lus10006507 locus=Lus10006507.g ID=Lus10006507.BGIv1.0 annot-version=v1.0 MLLTSPLELLNRKSILGYFKSKSDYVTDVIPTEALPGIWNAILKTGGTFTQWNPYSGRMAEILIDETAYGHRSGYFFKVQYYLGWAEDGEEAEAEHIDAL TALHDVVTPYVTKEPIEAFFNYRDLANGKNSVDKPDWEKAKVYGEKYFKSHFKRLSKIKPQFDRDNFFRNQQSIPPFPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20800			FAD-binding Berberine family p...		Lus10006507 [exp]	0	1
					Lus10002099 [exp]	3.5	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	4.9	1.0000
					Lus10011594 [exp]	6.0	1.0000
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	6.9	1.0000
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10031391 [exp]	7.7	1.0000
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10006735 [exp]	8.8	1.0000
AT1G52540			Protein kinase superfamily pro...		Lus10006985 [exp]	9.5	1.0000
AT5G18880			RNA-directed DNA polymerase (r...		Lus10018808 [exp]	10.2	1.0000
					Lus10037814 [exp]	10.8	1.0000
					Lus10034942 [exp]	13.0	1.0000

Compare expression of checked genes

Lus10006507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.