Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62830 619 / 0 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 610 / 0 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 569 / 0 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 459 / 3e-162 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 458 / 1e-161 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 457 / 4e-161 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT5G28840 107 / 2e-25 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT2G27860 105 / 6e-25 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G53500 106 / 1e-24 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G08200 104 / 1e-24 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037499 [exp] 676 / 0 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10030368 [exp] 619 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 618 / 0 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10015038 [exp] 575 / 0 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10024436 [exp] 573 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 551 / 0 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10005450 [exp] 466 / 1e-164 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 465 / 3e-164 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10040847 [exp] 465 / 3e-164 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129200 [exp] 617 / 0 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G204400 [exp] 610 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 572 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 565 / 0 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 468 / 9e-166 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 466 / 5e-165 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 462 / 3e-163 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.005G053000 [exp] 113 / 9e-28 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.006G272700 [exp] 112 / 1e-26 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.013G040600 [exp] 108 / 3e-26 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10006510 pacid=23141656 polypeptide=Lus10006510 locus=Lus10006510.g ID=Lus10006510.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCCGAAACCGCCACTCGCCGCCGTCCTCCCTCCGCCACCTTCCGGTACTTGCTCCGCCAGCAGAGGCTGGCATGTTTCCTCTCCGGATTCA CACTCGCCGCTCTCTTCTTCCATACATTCCCCATTTCCACCACCACCACGACACCACCAGAAGATACAACAACCGGATTCGCCGATCGGGCTGTACTACC CGATCCAACGAGTGAGGCGGTTTTGGCGACCCGGAGAGTGCTGATCGAGTCGTCGGTGGGGGGGAAAGTGCCGCAAGGGTTGAAGAGGAAAGGGAACCGG ATACTGGTGACCGGCGGGGCTGGTTTTGTCGGGAGCCATCTCGTGGACCGGTTGATTGGGAGAGGCGACAGCGTGATAGTGATCGACAATTTCTTCACCG GTAGGAAAGAGAATCTGATGCACCATTTCGGTAATCACAAGTTTGAGCTGATCCGGCACGACGTCGTGGAGCCAATTCTGCTGGAGGTTGATCAGATCTA CCATTTGGCTTGCCCTGCTTCCCCTGTTCATTACAAGTTCAATCCCACGAACGTGGCCGGAACGTTGAACATGCTCGGCCTGGCGAAGAGAGTCGGGGCG AGGTTCTTGCTAACCAGCACCAGCGAGGTCTACGGCGATCCATTGCAACATCCTCAGTCCGAGACTTACTGGGGGAATGTCAATCCAATTGGGGTGAGGA GCTGCTACGACGAAGGAAAGCGGACTGCGGAGACGCTAACGATGGACTATCACAGAGGCGCCGGGATTGAGGTGAGGATCGCTAGGATCTTCAACACCTA CGGGCCGCGGATGTGCATCGACGACGGCCGTGTGGTGAGCAACTTCGTAGCGCAGGCGCTGAGGAAGGAGCCGATGACGGTGTACGGCGACGGGAAACAA ACCAGGAGTTTCCAATACGTTTCGGATCTGGTGGAGGGACTTGTACGGTTGATGGAGGGGGAGCATATTGGTCCGTTCAATCTCGGCAATCCCGGGGAGT TCACCATGCTTCAGCTAGCCGAGGTGATCCAAGAGACTATTGATCCAAAGGCGAGAATAGAGTTCAGGCCCAACACGGAGGACGATCCACACAAGAGGAA GCCGGACATCACGAGGGCGAAAGAGCTGCTTGGTTGGGAACCGACGGTATCGCTGAGAAAGGGACTTCCGATGATGGTTTCCGATTTCCGACAACGCATC TTCGGCGGACAGAAGGCTTTCTCCGCTTGA
AA sequence Show only first row Show all	>Lus10006510 pacid=23141656 polypeptide=Lus10006510 locus=Lus10006510.g ID=Lus10006510.BGIv1.0 annot-version=v1.0 MASPETATRRRPPSATFRYLLRQQRLACFLSGFTLAALFFHTFPISTTTTTPPEDTTTGFADRAVLPDPTSEAVLATRRVLIESSVGGKVPQGLKRKGNR ILVTGGAGFVGSHLVDRLIGRGDSVIVIDNFFTGRKENLMHHFGNHKFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPTNVAGTLNMLGLAKRVGA RFLLTSTSEVYGDPLQHPQSETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPMTVYGDGKQ TRSFQYVSDLVEGLVRLMEGEHIGPFNLGNPGEFTMLQLAEVIQETIDPKARIEFRPNTEDDPHKRKPDITRAKELLGWEPTVSLRKGLPMMVSDFRQRI FGGQKAFSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	7.0	0.8219
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	8.5	0.8051
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010040 [exp]	12.2	0.7389
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	17.7	0.7468
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Lus10041968 [exp]	18.5	0.7653
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	20.9	0.7763
AT5G45310			unknown protein		Lus10022973 [exp]	23.7	0.6947
					Lus10037199 [exp]	38.9	0.7063
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039734 [exp]	66.0	0.7164
AT5G67090			Subtilisin-like serine endopep...		Lus10001130 [exp]	77.2	0.6932

Compare expression of checked genes

Lus10006510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.