Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50650 71 / 4e-16 Stigma-specific Stig1 family protein (.1) AT4G26880 65 / 5e-14 Stigma-specific Stig1 family protein (.1) AT1G11925 64 / 1e-13 Stigma-specific Stig1 family protein (.1) AT1G53130 61 / 2e-12 GRI GRIM REAPER, Stigma-specific Stig1 family protein (.1) AT5G55110 60 / 7e-12 Stigma-specific Stig1 family protein (.1) AT1G50720 57 / 4e-11 Stigma-specific Stig1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041930 [exp] 70 / 6e-16 AT1G53130 152 / 1e-47 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10005544 [exp] 66 / 1e-14 AT1G53130 125 / 6e-38 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10020831 [exp] 62 / 7e-13 AT1G11925 100 / 7e-28 Stigma-specific Stig1 family protein (.1) Lus10012679 [exp] 60 / 6e-12 AT1G11925 104 / 3e-29 Stigma-specific Stig1 family protein (.1) Lus10011146 [exp] 60 / 8e-12 AT1G50720 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Lus10043047 [exp] 59 / 1e-11 AT1G50720 133 / 3e-40 Stigma-specific Stig1 family protein (.1) Lus10000696 [exp] 57 / 2e-10 AT1G50650 100 / 3e-26 Stigma-specific Stig1 family protein (.1) Lus10011117 [exp] 56 / 3e-10 AT1G50720 117 / 6e-34 Stigma-specific Stig1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G220900 [exp] 132 / 2e-40 AT1G11925 73 / 3e-17 Stigma-specific Stig1 family protein (.1) Potri.001G399200 [exp] 72 / 9e-17 AT1G53130 149 / 2e-46 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Potri.011G118600 [exp] 70 / 5e-16 AT1G53130 136 / 1e-41 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Potri.001G356600 [exp] 66 / 4e-14 AT1G50720 133 / 2e-40 Stigma-specific Stig1 family protein (.1) Potri.010G228100 [exp] 65 / 6e-14 AT1G11925 94 / 2e-25 Stigma-specific Stig1 family protein (.1) Potri.004G006900 [exp] 64 / 9e-14 AT1G11925 108 / 4e-31 Stigma-specific Stig1 family protein (.1) Potri.011G009100 [exp] 64 / 2e-13 AT1G11925 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Potri.011G080800 [exp] 63 / 2e-13 AT1G50720 130 / 3e-39 Stigma-specific Stig1 family protein (.1) Potri.004G007000 [exp] 62 / 8e-13 AT1G11925 96 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.011G009000 [exp] 62 / 9e-13 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04885 [flax] [poplar] Stig1 Stigma-specific protein, Stig1
Representative CDS sequence Show only first row Show all	>Lus10006512 pacid=23141629 polypeptide=Lus10006512 locus=Lus10006512.g ID=Lus10006512.BGIv1.0 annot-version=v1.0 ATGCTCTCACCCGCACTACTTGTCATCACCATCCTCCTCTTCCTCTCCGCTGCCAGCTGGCCAAGCCATGCCGGTGACGACGGCGGCCGTCCAAGCCACT TGAACTTCTTCCGGTCGAGCTCTCGCAGGCCACGCCAGGGGTACTGGTGCAGCAGAGACGATCCTGAGGCGTGTTTGAGGAACCCACGGGGAGGGCGGAC TTGCTGTTTCGGGAGAGTTTGTAAGGACACGCTTAGAGACGGCAATAACTGCGGGACGTGTGGGGAAAAGTGTCCGTTTGGGTTCGTTTGCTGCGATGGA AAGTGTGTGGATGTTAGGAATGATGCTAGCCATTGCGGATCGTGCTTTCAGGAGTGCCGTTCTGGTCAACGGCTCTGCTCTTTTGGAATGTGTGATTATG CCGCTGCCTGA
AA sequence Show only first row Show all	>Lus10006512 pacid=23141629 polypeptide=Lus10006512 locus=Lus10006512.g ID=Lus10006512.BGIv1.0 annot-version=v1.0 MLSPALLVITILLFLSAASWPSHAGDDGGRPSHLNFFRSSSRRPRQGYWCSRDDPEACLRNPRGGRTCCFGRVCKDTLRDGNNCGTCGEKCPFGFVCCDG KCVDVRNDASHCGSCFQECRSGQRLCSFGMCDYAAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50650			Stigma-specific Stig1 family p...		Lus10006512 [exp]	0	1
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005513 [exp]	1.4	0.9277
AT5G19970			unknown protein		Lus10019451 [exp]	6.9	0.9205
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	9.2	0.9059
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	9.6	0.9085
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	11.4	0.8986
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	12.4	0.9059
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10019058 [exp]	12.4	0.8538
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	13.5	0.8862
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	13.7	0.8797
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10002554 [exp]	13.9	0.8495

Compare expression of checked genes

Lus10006512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.