Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02700 73 / 7e-14 F-box/RNI-like superfamily protein (.1) AT3G18150 72 / 1e-13 RNI-like superfamily protein (.1) AT3G28410 71 / 3e-13 F-box/RNI-like superfamily protein (.1) AT5G02930 67 / 4e-12 F-box/RNI-like superfamily protein (.1) AT1G60400 67 / 6e-12 F-box/RNI-like superfamily protein (.1) AT1G49610 65 / 2e-11 F-box family protein (.1) AT3G58900 64 / 2e-11 F-box/RNI-like superfamily protein (.1.2.3.4) AT1G16930 64 / 6e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 64 / 7e-11 F-box/RNI-like superfamily protein (.1) AT5G18780 62 / 2e-10 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027244 [exp] 374 / 4e-128 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 327 / 2e-107 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10038935 [exp] 268 / 6e-88 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 265 / 7e-87 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10029433 [exp] 259 / 7e-84 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10035564 [exp] 233 / 3e-74 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10020292 [exp] 220 / 3e-68 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10027245 [exp] 217 / 5e-68 ND / Lus10032255 [exp] 210 / 1e-64 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 125 / 2e-32 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 108 / 2e-26 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 96 / 8e-22 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 84 / 9e-18 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 80 / 2e-16 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 78 / 1e-15 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 73 / 2e-14 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G322900 [exp] 61 / 6e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024300 [exp] 59 / 2e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.013G151200 [exp] 55 / 6e-08 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006513 pacid=23141648 polypeptide=Lus10006513 locus=Lus10006513.g ID=Lus10006513.BGIv1.0 annot-version=v1.0 ATGGTGAGAAGAAGCAAGAGGATTGAGAATAGAATTGACAGACTAAGTGGTCTTCCTGACTGTCTTTTACATCACATCCTCTCTTTTCTTGATACTAAAT CTTCCATTCAAACAAGCATTTTGTCGAGAAGGTGGATATCTGTATGGAAACATGTCCCCGTTCTCACTTTCACTCATAGCCCGTTCAAGTCTGATTCAGG GTTCGAGCGGTATGTAGACCAAGTTCTGTCCCTTCGTTCTGACTGTAGTAGTGTCACCAGGGTTACAGTGGATGTCTCTCGGAGGATGGATTTGTTAGAT AGGATCATCAGATATGTTGCTTCCCATGGAGTTGAAGAGCTATTCATTTGTGCTTTATTTTTGAAGGCGTTTGGATCAGTATCCTCTTGTTATCAATTTC TAAAAGTTCTGGAGTTGGAGGGAGTCAGTATTCATAAGTCTGATGCTGAATTGTTTTCTGGTTTTCAATTGCTTGAATCTCTAACTCTGACCTACTGCAA CCTTACATTTTCTGCTGATGCATCACAAAATGATGCTTTTGCCAACTTCTTCAGATTGAAAACTCTAAAGCTAGTCCGCTGCTATTCTTTTATTCGAATA TCCGGGAATCATGTTCTAATAGTAACTGGCCCCAAACTGCTTAGCTTGGAGATCGTTTGGCCAAGATTCGAAAGTCTTCAAATCAATGCTCCCAAGCTCC AATCTTTAAGTCTTAAGATTGATATTTCTTGTTGCACACTAATAAAAGTGTCCAAGTCAAATCTTCCTTCCCTTAGTCGTGCAAACATCGGGCTGTTCAT GTTGGTGGACACTTGTGCTAGTGACAATGGTGTCGAGAAGCAACTGCTGCTCGAGCTGTGTGCAAATTTGTTCAAGGTTCTACATAATGTACAAGTTCTG ACTCTGCAGGCTATAACCTTTGAGTTTCTAATCGAGGGTTTTAGCTTAATGAAACACCAATCTCCCCCCTTTACAAGAATGAAGTCCTTGAATTTGCATT GTCTTGAAGGAGGATCTTTAGACGTACCAGATGAAATAATTCATTATTTTCTTGGAGGCTCTCCTAATGGCAAAGATAAGTGCTTTACAATCGAGAGGCT ACATTGA
AA sequence Show only first row Show all	>Lus10006513 pacid=23141648 polypeptide=Lus10006513 locus=Lus10006513.g ID=Lus10006513.BGIv1.0 annot-version=v1.0 MVRRSKRIENRIDRLSGLPDCLLHHILSFLDTKSSIQTSILSRRWISVWKHVPVLTFTHSPFKSDSGFERYVDQVLSLRSDCSSVTRVTVDVSRRMDLLD RIIRYVASHGVEELFICALFLKAFGSVSSCYQFLKVLELEGVSIHKSDAELFSGFQLLESLTLTYCNLTFSADASQNDAFANFFRLKTLKLVRCYSFIRI SGNHVLIVTGPKLLSLEIVWPRFESLQINAPKLQSLSLKIDISCCTLIKVSKSNLPSLSRANIGLFMLVDTCASDNGVEKQLLLELCANLFKVLHNVQVL TLQAITFEFLIEGFSLMKHQSPPFTRMKSLNLHCLEGGSLDVPDEIIHYFLGGSPNGKDKCFTIERLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02930			F-box/RNI-like superfamily pro...		Lus10006513 [exp]	0	1

Compare expression of checked genes

Lus10006513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.