Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06890 74 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037501 [exp] 117 / 2e-34 AT3G06890 108 / 4e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221000 [exp] 81 / 2e-20 AT3G06890 83 / 1e-21 unknown protein Potri.010G013100 [exp] 74 / 1e-17 AT3G06890 65 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006514 pacid=23141626 polypeptide=Lus10006514 locus=Lus10006514.g ID=Lus10006514.BGIv1.0 annot-version=v1.0 ATGATGGGTGGAGGAGGTGAATACTACGACCGGAGGAACTACCAGTACCACGCCCATCCTCCCCCGCCCATGGGATTCGGCGGCCGCGGCGGAGGAGGCA CTCCCCACGGGATCATACTCGCCGTAGTCGTCTGCATTGTGCTCCTAGCTCCCTTCATCTTCGGCGACTCCGGCGAAGTCATTACCGAAGCAATCGCCGA GCTCCTCAGTCCGCTCGGACTCCTCCTCTTACCGATCTTCCTCCTTTTGACCATCCAGTTCCTCTCCTCCGATCGCGGATCTGTCGTCTCCGCAATTTTC TCCACCGGCGAGCCTCAGAGCTTCCACCGAGTGAGTGGATCTCCCGTCGGCGTCGCCTTGTTCCTTTTCCTAGTGTTGTTTCTGCTGCATAACCGTATGT CAATATTCGGCGGCGATGATGATTCCGACGATTGA
AA sequence Show only first row Show all	>Lus10006514 pacid=23141626 polypeptide=Lus10006514 locus=Lus10006514.g ID=Lus10006514.BGIv1.0 annot-version=v1.0 MMGGGGEYYDRRNYQYHAHPPPPMGFGGRGGGGTPHGIILAVVVCIVLLAPFIFGDSGEVITEAIAELLSPLGLLLLPIFLLLTIQFLSSDRGSVVSAIF STGEPQSFHRVSGSPVGVALFLFLVLFLLHNRMSIFGGDDDSDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06890			unknown protein		Lus10006514 [exp]	0	1
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Lus10028097 [exp]	2.8	0.8017
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	3.7	0.7510
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	10.2	0.7722
					Lus10012740 [exp]	10.8	0.7775
AT4G33945			ARM repeat superfamily protein...		Lus10027923 [exp]	11.1	0.7808
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	11.5	0.7218
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	31.3	0.6948
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013822 [exp]	43.0	0.7184
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10004187 [exp]	43.6	0.6350
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	46.5	0.7071

Compare expression of checked genes

Lus10006514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.