Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49060 292 / 7e-98 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT3G57340 157 / 5e-45 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 149 / 1e-42 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G17830 73 / 4e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 69 / 5e-13 DNAJ heat shock family protein (.1) AT1G80030 69 / 1e-12 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G25560 67 / 3e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G08970 67 / 4e-12 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G68370 65 / 1e-11 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT3G06778 64 / 1e-11 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037502 [exp] 537 / 0 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10030079 [exp] 196 / 7e-60 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10019421 [exp] 194 / 2e-59 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10043277 [exp] 194 / 4e-58 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10031336 [exp] 76 / 5e-15 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 76 / 6e-15 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10011484 [exp] 73 / 4e-14 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023122 [exp] 72 / 1e-13 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10040777 [exp] 69 / 5e-13 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013200 [exp] 333 / 3e-113 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.006G153700 [exp] 198 / 5e-61 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.016G120000 [exp] 73 / 5e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 69 / 5e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 69 / 7e-13 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.007G094900 [exp] 68 / 1e-12 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 68 / 2e-12 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 67 / 2e-12 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.001G072700 [exp] 66 / 3e-12 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.010G122300 [exp] 66 / 4e-12 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF09320 [flax] [poplar] DUF1977 Domain of unknown function (DUF1977)
Representative CDS sequence Show only first row Show all	>Lus10006515 pacid=23141654 polypeptide=Lus10006515 locus=Lus10006515.g ID=Lus10006515.BGIv1.0 annot-version=v1.0 ATGGATGGGAACAAAGACGAGGCGCTGAGATGTATTTCGATCGCCGAGGAGGCGATTGCGTCCGGCAATAAACTGCGCGCCTTAAGATTCATCAGATTTG CACAACGCCTGAATCGAGACTCGCCTGTTGATGAGCTCCTTGCTGCATGTGAGAGATTAGGTTCCGTCAGCGGAAGAAATTTCGATGGTGAAAAGAGGAG TAGTATTCCCGGTGCAGGAAAATTAGGTGAGGGATCAGTTGGGGACAAGGGTTATAGTGAAGAGCATTTGCAATTGATTAGGCAGATAATTAGGACCAAA GATCACTACACGATTCTTGGCTTGGTGAAAACTTGTTCCGTAGATGAGATTAGGAAGGCGTATAGGAAATTGTCACTGAAAGTTCACCCTGATAAGAACA AGGCACCTGGAGCCGAGGAAGCATTCAAAAAAGTCTGTGCAGCTTTTAAGTGCCTGAGTGATAGTGAATTGAGGAGGCAGTATGATCATGTGGGTTTGGT AAGGGGGTTCGAGTACACCGAACGGAGCAATGTCAGGCCGAGAAGGACGAGGAGAAATTTTAATGGTTATTACGACAATGATGTTGATATTAATGAGATG TTCGGCCGGTTTATAATTCTACAGATACTGCCATTTCTGTTGATCTTCGTGCTAGCGTCTCTACCTTTTTCAGAGCCGGAGTATTCCTTGCATAAGAACT ACTCCTATCAGATCCCAAAGACAACTGAGAAGCAAGGGGTTGAATACTTTGTCAAATCTTCAGCGTTTGATGAAAGCTTCCCTCTTGGAAGCACTGCTCG AAGAAAAATCGAGAACAGTGTGATTATGGAATATAAAAACTTGCTATGGCGGCACTGTCACATTGAAATGCAGAGGCGTCATTGGAATAAGGTTTTGCCC ACGCCTAACTGCAATAAGCTGCACAATCTTGGATTGGCATGA
AA sequence Show only first row Show all	>Lus10006515 pacid=23141654 polypeptide=Lus10006515 locus=Lus10006515.g ID=Lus10006515.BGIv1.0 annot-version=v1.0 MDGNKDEALRCISIAEEAIASGNKLRALRFIRFAQRLNRDSPVDELLAACERLGSVSGRNFDGEKRSSIPGAGKLGEGSVGDKGYSEEHLQLIRQIIRTK DHYTILGLVKTCSVDEIRKAYRKLSLKVHPDKNKAPGAEEAFKKVCAAFKCLSDSELRRQYDHVGLVRGFEYTERSNVRPRRTRRNFNGYYDNDVDINEM FGRFIILQILPFLLIFVLASLPFSEPEYSLHKNYSYQIPKTTEKQGVEYFVKSSAFDESFPLGSTARRKIENSVIMEYKNLLWRHCHIEMQRRHWNKVLP TPNCNKLHNLGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	0	1
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	1.7	0.8749
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	3.0	0.8614
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	3.9	0.8260
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	5.1	0.8626
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10018168 [exp]	5.5	0.8177
AT4G04614			unknown protein		Lus10006902 [exp]	5.5	0.8219
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	5.8	0.8039
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	6.9	0.8533
AT2G44020			Mitochondrial transcription te...		Lus10004534 [exp]	7.2	0.7964
AT5G10780			unknown protein		Lus10023585 [exp]	7.5	0.8082

Compare expression of checked genes

Lus10006515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.