Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 649 / 0 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 56 / 4e-08 5'-AMP-activated protein kinase-related (.1) AT3G01510 53 / 4e-07 LSF1 like SEX4 1 (.1) AT5G03420 50 / 3e-06 5'-AMP-activated protein kinase-related (.1) AT4G16360 43 / 0.0003 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004490 [exp] 670 / 0 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 665 / 0 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10015179 [exp] 664 / 0 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10031501 [exp] 637 / 0 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037503 [exp] 587 / 0 AT1G09020 433 / 9e-152 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 377 / 3e-130 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10039076 [exp] 53 / 3e-07 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10038783 [exp] 52 / 5e-07 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037220 [exp] 50 / 3e-06 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023500 [exp] 760 / 0 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 753 / 0 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 643 / 0 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 640 / 0 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 286 / 1e-94 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029900 [exp] 220 / 1e-69 AT1G09020 249 / 1e-81 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G034600 [exp] 52 / 8e-07 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 51 / 1e-06 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.006G123300 [exp] 47 / 2e-05 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1) Potri.006G005800 [exp] 45 / 4e-05 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10006516 pacid=23141650 polypeptide=Lus10006516 locus=Lus10006516.g ID=Lus10006516.BGIv1.0 annot-version=v1.0 ATGTTTGCTTCGCGGATGGAATCCGGGCGGGAAGCCGGTGGCAGAGTTGCATCCGGGACGGTGTTGATGCGGTTTGTGTGGCCTCACGGTGGTCGGAGCG TTTTCATCACCGGTTCTTTTAACGGATGGGGTGAGCTCGTTGCTATGGCCCCTGTTGAAGGTTCCCCTAGAGTGTTTCAGACAATTTGCAGTGTAACTCC TGGTTACCACTTGTACAAGTTTTTTGTTGATGGGGAGTGGCGGCATGACGAACACCAATCTTGCGTTACCAGTGAATATGGGATGGTAAATACTCTCCTC TTCCCAGTTGATGCCAACTACAATCCTACTGTAGGGTCAGAGTTACATGCGAACATGGAGTTGGACAATGAACAGTTCAGGCGTGTGGTTCACGTCTCAG ATGGCACCTTGAATGAGGCCCTGCCAATGATATCAGAAGCAGATGTTCAGGCCTCTCGCCATCGTATTTCCGCATTTATGTCTACGCACACTGCTTATGA GTTGCTTCCAAAGTCCGGCAAGGTTGTTGCACTGGATGTTGACCTACCGGTAAAGCAAGCATTTCATATATTACATGAGCAAGGAATCCCTATGGCTCCT CTTTGGGACTTCAGCCGAGGCCAGTTTGTTGGAGTGCTTAGTGCTTTCGATTTCATCTTAATATTGAGAGAGCTTGGCAATCATGGGTCGAATCTGACGG AGGAAGAACTAGATACTCATACTATATCAGCTTGGAAAGAAGGAAAAGCATATCTTAGTAGACAAATTGATGGGCAAGTTGGAGCTGTTTCTAAACAGCT AATCCATGCTGGGCCATATGACAGCTTGAAAGAGGTTGCTCTGAAGATATTGCGAAATAATATCTGCACCGTACCTATCATCCATTCATCATCAGATGAT GGTTCATTTCCCCAGCTACTACATCTTGCTTCACTATCTGAGATACTGAAATGTATTTTCAGGTACTTTAGACATTGTTCTGGCTCCTTGCCTGTACTAC AATTACCCATATGTGCGATTCCATTGGGGACTTGGGTCCCAAAGATAGGGGAGTCAAATATTCGACCTTTAGCGATGTTGAGACCCCGTGCTTCCCTTAG TGCTGCTTTAAACTTGTTGATTCATGCTCAAGTAAGTTCAATACCGATAGTTGACGACAATGATTCATTACTTGACATATATTGTCGGAGTGATATAACT GCTCTAGCAAAAGACAGAGTATACACACACATTAATCTTAACGAAATGACTATTCATCAGGCCTTGCAATTGGGGCAAGACTCGTTTTCCCCATATGAAT CAAGAAGCCAGAGATGCCAGATGTGCTTACGCACCGATTCACTGTTCAAAGTGATGGACCGGTTTTCTAACCCAGGGGTAAGGCGGGTTATCATAGTAGA AGCTGGAAGCAAACGGGTGGAAGGCATCGTTACCCTTAGCGACATTTTCAGATTCTTGCTTGTTTAG
AA sequence Show only first row Show all	>Lus10006516 pacid=23141650 polypeptide=Lus10006516 locus=Lus10006516.g ID=Lus10006516.BGIv1.0 annot-version=v1.0 MFASRMESGREAGGRVASGTVLMRFVWPHGGRSVFITGSFNGWGELVAMAPVEGSPRVFQTICSVTPGYHLYKFFVDGEWRHDEHQSCVTSEYGMVNTLL FPVDANYNPTVGSELHANMELDNEQFRRVVHVSDGTLNEALPMISEADVQASRHRISAFMSTHTAYELLPKSGKVVALDVDLPVKQAFHILHEQGIPMAP LWDFSRGQFVGVLSAFDFILILRELGNHGSNLTEEELDTHTISAWKEGKAYLSRQIDGQVGAVSKQLIHAGPYDSLKEVALKILRNNICTVPIIHSSSDD GSFPQLLHLASLSEILKCIFRYFRHCSGSLPVLQLPICAIPLGTWVPKIGESNIRPLAMLRPRASLSAALNLLIHAQVSSIPIVDDNDSLLDIYCRSDIT ALAKDRVYTHINLNEMTIHQALQLGQDSFSPYESRSQRCQMCLRTDSLFKVMDRFSNPGVRRVIIVEAGSKRVEGIVTLSDIFRFLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10006516 [exp]	0	1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037503 [exp]	2.0	0.8693
AT3G07180			GPI transamidase component PIG...		Lus10038186 [exp]	7.9	0.8058
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10029547 [exp]	8.1	0.7906
AT1G61470			Polynucleotidyl transferase, r...		Lus10007771 [exp]	10.1	0.7960
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	13.1	0.8144
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	14.0	0.7486
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	17.8	0.8143
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	20.8	0.8002
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	21.0	0.8204
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10028572 [exp]	21.8	0.7918

Compare expression of checked genes

Lus10006516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.