Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15720 645 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 381 / 8e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 379 / 5e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 377 / 6e-123 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 378 / 8e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 378 / 1e-122 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 374 / 5e-120 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 368 / 5e-119 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 370 / 3e-118 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 368 / 3e-118 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037505 [exp] 941 / 0 AT4G15720 611 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 383 / 9e-125 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 377 / 1e-122 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 377 / 2e-122 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 380 / 4e-122 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 377 / 6e-122 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 374 / 9e-122 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 378 / 6e-121 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10040504 [exp] 370 / 3e-120 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G217000 [exp] 803 / 0 AT4G15720 678 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 394 / 6e-127 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 385 / 2e-125 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 381 / 2e-125 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G321700 [exp] 382 / 6e-125 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 380 / 8e-125 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 384 / 1e-124 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 379 / 3e-124 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G135400 [exp] 377 / 1e-123 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 380 / 2e-123 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006517 pacid=23141625 polypeptide=Lus10006517 locus=Lus10006517.g ID=Lus10006517.BGIv1.0 annot-version=v1.0 ATGAAGTGGCTGTCAAACCGAAACTTCCGGTTTGCCTCGCCATTTTCCCTCCAAGAAACCTCTTCATCGCCCAATCTCATACAACAGCTCCGTAACTGCA ATGAATTCCGATCAGTATCCTCAATCCACTGCATAATACTGAAATCCGGGCTAATCGCCGATACTTTTCCGGCTAATCACCTCATCAATGGATACGTCAG ACTGCGGGAGATCAGAGATGCCCGCCGCGTGTTCGAGGAAATGCCTGAACCAAATGTTGTGTCTTGGACCTCCCTCATCGCTGGTTATGTGGGCGCTGGT CGTCCTAGATTCGCTCTTTGGATGTATTCAAAGATGTTTGAGACTTCAGTTGCTCCCAATGATTTCACTGTATCTACAATTATCAACGCTTGTTCGATTC TAGCGGAACTTGAAACAGGGAAGAAGATTCATGCCCACGCTGAAGTCATGGGGTTTGGAAGCAACCTTGTGGTGTGTTCTTCATTGGTTTGCATGTACGG GAACTGTAATGATGTTGATGTCGCTAGGTCAGTTTTCAATTCTATGGATTATAAGAACATTGTCACTTGGACTTCAATGATAGCGGCGTGTGCACAGAAC GGAAGAGGGAGTGAAGCACTTCAAGTTTTCAGGAATTTCAATTCCGGAGCAGGCGAAGAACGTGCAAACGATTTCATGTTGACTAGTGTGATTAATGCTT CTGCAAGCTTGGGGAAGCTTGCCGCAGGGAGAGCATCACATGGAGCAGTAATTCGTGGCAGGCATGAGGTAAACGATGTAGTCACGAGTTCACTTGTCGA TATGTATGCCAAGTGTGGTTGCTTTGATTACTCTTGGAAGATTTTCAAGAGAATCCAGAATCCTTCTGTGGTTCCGTATACTTCAATGATTGTAGGTGCT GCTAAGTATGGGCTTGGAAAATTGTCCATTGAACTATTCAAGGAGATGTTAGATAGAGGAGTCAAGCCGAATGACGTAACATTTGTTGGCGTGTTGCATG GATGTAGTCACTCAGGGCTTGTGAATGAAGGGCTCGAGTTTGTAAACTCGATGCTAGAGAAATACGGAGTAAACCCTGATGCAAAGCATTATACTTGCGT TGTTGATATGTACTGTCGAGTTGGTCGACTTCATGAAGCTTATAAATTGGCTAAATCGATTCGTGTAGGAGCCATCGAAGGGGCTCTCTTGTGGGGCACA CTGCTTTCAGCCAGTAGGCTTCATGGACGGGTAGACATTGCCATTGAAGCTAGCAATAGGTTAATAGAATCCAAACAGCAAGTAGCGGGTGCATATGTAA CGATGTCGAATGCATATGCATTGGCAGGGGAGTGGGAGAACGCCCATGGAATGAGATCTGAAATGAAGCGGGCTGGTGTGGTGAAGGATCCTGGCTGCAG CTGGATCGAGATTCGCGAATCGACGTTTGTGTTCCACGCTGGCGATTTATCCTTCGAAAGCGGGAAGGAGGTGTTGAGTAAGCTGAAGGAGTTGGAAGGT AAGATGAAAGAGAGAGGGTATTTGGGCGGTAGTATGGGTTTGGTTTTTGTAGAGGTGGAACAAGAAGCCAAGGAAGAGATTGTTAGTCTTCACAGTGAGA GATTAGCCTTGGGGTTTGGGTTGATCACTGTCACTAAAGGAATCACCATTAGAATCATGAAGAACTTGAGGATGTGCACCGACTGTCATGAAGCGTTCAA GGTAATCAGTGGGATTGTAGATAGAGATTTTGTGGTTCGAGATGTGAACAGATTCCATCATTTCCAGAATGGTTCTTGCAGTTGCAGGGATTTCTGGTAA
AA sequence Show only first row Show all	>Lus10006517 pacid=23141625 polypeptide=Lus10006517 locus=Lus10006517.g ID=Lus10006517.BGIv1.0 annot-version=v1.0 MKWLSNRNFRFASPFSLQETSSSPNLIQQLRNCNEFRSVSSIHCIILKSGLIADTFPANHLINGYVRLREIRDARRVFEEMPEPNVVSWTSLIAGYVGAG RPRFALWMYSKMFETSVAPNDFTVSTIINACSILAELETGKKIHAHAEVMGFGSNLVVCSSLVCMYGNCNDVDVARSVFNSMDYKNIVTWTSMIAACAQN GRGSEALQVFRNFNSGAGEERANDFMLTSVINASASLGKLAAGRASHGAVIRGRHEVNDVVTSSLVDMYAKCGCFDYSWKIFKRIQNPSVVPYTSMIVGA AKYGLGKLSIELFKEMLDRGVKPNDVTFVGVLHGCSHSGLVNEGLEFVNSMLEKYGVNPDAKHYTCVVDMYCRVGRLHEAYKLAKSIRVGAIEGALLWGT LLSASRLHGRVDIAIEASNRLIESKQQVAGAYVTMSNAYALAGEWENAHGMRSEMKRAGVVKDPGCSWIEIRESTFVFHAGDLSFESGKEVLSKLKELEG KMKERGYLGGSMGLVFVEVEQEAKEEIVSLHSERLALGFGLITVTKGITIRIMKNLRMCTDCHEAFKVISGIVDRDFVVRDVNRFHHFQNGSCSCRDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10018537 [exp]	1.7	0.8054
					Lus10030382 [exp]	2.0	0.7767
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	2.4	0.7852
AT3G52280		GTE6	general transcription factor g...		Lus10008393 [exp]	4.5	0.7577
AT3G15395			unknown protein		Lus10027849 [exp]	8.0	0.7413
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	9.9	0.7398
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	11.4	0.7815
AT3G60480			unknown protein		Lus10034728 [exp]	12.4	0.7386
AT5G66360		DIM1B	adenosine dimethyl transferase...		Lus10041797 [exp]	13.1	0.7232
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	13.4	0.7395

Compare expression of checked genes

Lus10006517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.