Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21420 523 / 0 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 292 / 6e-97 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 279 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 275 / 4e-90 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 269 / 1e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 268 / 2e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 261 / 7e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 247 / 4e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 228 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G49390 223 / 4e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030995 [exp] 290 / 7e-96 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10011980 [exp] 282 / 9e-93 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 282 / 1e-92 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10040112 [exp] 282 / 1e-92 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10015252 [exp] 280 / 6e-92 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10030934 [exp] 278 / 5e-91 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10022292 [exp] 275 / 3e-90 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10026173 [exp] 275 / 5e-90 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011985 [exp] 272 / 8e-89 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023600 [exp] 592 / 0 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G382400 [exp] 308 / 6e-103 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 303 / 3e-101 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G381700 [exp] 293 / 3e-97 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.010G201000 [exp] 289 / 2e-95 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G025900 [exp] 287 / 7e-95 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G200900 [exp] 283 / 3e-93 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G217200 [exp] 281 / 3e-93 AT3G21420 236 / 6e-76 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355200 [exp] 270 / 4e-88 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G023550 [exp] 259 / 1e-86 AT3G21420 210 / 6e-68 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006518 pacid=23141649 polypeptide=Lus10006518 locus=Lus10006518.g ID=Lus10006518.BGIv1.0 annot-version=v1.0 ATGGCACCTGTACCCATTTCTCAAATCAACACTGGTCACATTGATGATGTTCAAGAGCTTAGGAAGGCCAAACCAACTCTAGTTCCTCATAGATTCGTCC GGGATGCCACCGAGAGGCCGACTCTAGCTACTTCCCTACTCACAACTACCGATCAACATCATGATGGTCATAAGGTCCCCGTTATCGATTTCTCTAAGCT CACGAATCATCTTGATCAAGGTCAGTGGCAGATCGAGATTTTGAAGTTGAGTAAAGCCTGCGAGGAGTGGGGATTTTTCCAGGTGGTCAACCACGGGATC GATACGAGCTTGGTTGAGGGCATAGAAGAGGTAGCAAAGGATTTTTTCATGCTACCATTGGAAGAGAAGCAGAGGTATCCAATGGTGGCAGGGACAGTTC AGGGATATGGACAAGCATTTGTCTTCTCAGAGGAACAAAAGCTTGATTGGTGCAATATGTTTGCACTTGGGGTTGAGCCTCACTTTATAAGGAACCCAAA ACTATGGCCATCAAATCCACCAAATTTCAGTGAAACTGTTGAAGATTATTCAAGAGAAGTGAGGAAGCTTTGCAAGAACCTGTTGGAATCCATGGCTGTC AGCCTTGGAATGAAAGCAGAGAAATTCAATGAGATGTTTGGAGTTGGTGTGCAAGCCATAAGGATGAACTATTACCCACCATGTTCAAGGCCAGACCTTG TTTTAGGTCTCAGCCCACATTCTGATGGGAGTGCCCTCACAGTTTTACAACAAGGGAAAGGTAGCTCAGTTGGACTCCAAATCCTCAAGGACACCATATG GATCCCTGTTCAGCCACTCCCCAATGCTCTGGTTATCAACATTGGAGACACCTTGGAAGTGCTGACAAATGGGAAATACAAGAGCGTGGAACATAGGGCA GTGACACACAAAGAAAAGGACAGACTATCAATAGTGACATTCTATGCCCCAAGCTATGAGGTGGAGGTTGGACCATTGGCAGAAGTGGTGGATGAGAACA ACCCATGCAACTACAGAAGATACAATCATGGTGAATACAGCAGGCACTATGTCACTAGCAAGTTGCAAGGAAAGAAAACACTTGAATTTGCCAAAGTCAA TAATAATTAG
AA sequence Show only first row Show all	>Lus10006518 pacid=23141649 polypeptide=Lus10006518 locus=Lus10006518.g ID=Lus10006518.BGIv1.0 annot-version=v1.0 MAPVPISQINTGHIDDVQELRKAKPTLVPHRFVRDATERPTLATSLLTTTDQHHDGHKVPVIDFSKLTNHLDQGQWQIEILKLSKACEEWGFFQVVNHGI DTSLVEGIEEVAKDFFMLPLEEKQRYPMVAGTVQGYGQAFVFSEEQKLDWCNMFALGVEPHFIRNPKLWPSNPPNFSETVEDYSREVRKLCKNLLESMAV SLGMKAEKFNEMFGVGVQAIRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSSVGLQILKDTIWIPVQPLPNALVINIGDTLEVLTNGKYKSVEHRA VTHKEKDRLSIVTFYAPSYEVEVGPLAEVVDENNPCNYRRYNHGEYSRHYVTSKLQGKKTLEFAKVNNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	0	1
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	2.0	0.8660
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	2.2	0.8546
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	3.2	0.8917
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10009697 [exp]	7.0	0.8967
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	9.4	0.8279
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	11.1	0.8723
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	12.3	0.8171
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	13.4	0.8289
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	17.7	0.8414
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	18.5	0.8372

Compare expression of checked genes

Lus10006518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.