Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47820 345 / 2e-106 unknown protein AT1G09050 322 / 5e-97 unknown protein AT1G09040 320 / 3e-96 unknown protein AT1G55050 294 / 1e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037506 [exp] 1211 / 0 AT1G09050 359 / 7e-112 unknown protein Lus10029906 [exp] 334 / 2e-99 AT1G09040 385 / 6e-117 unknown protein Lus10004495 [exp] 329 / 9e-98 AT1G09050 376 / 1e-113 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023900 [exp] 513 / 5e-170 AT2G47820 381 / 2e-119 unknown protein Potri.008G210200 [exp] 501 / 3e-165 AT2G47820 375 / 4e-117 unknown protein Potri.005G027300 [exp] 383 / 8e-120 AT1G09040 386 / 1e-119 unknown protein Potri.013G019300 [exp] 375 / 1e-116 AT1G09040 384 / 1e-118 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006519 pacid=23141634 polypeptide=Lus10006519 locus=Lus10006519.g ID=Lus10006519.BGIv1.0 annot-version=v1.0 ATGGATGAAATTCAGCTGGATGGCATTGGAAGTCTTAATGCCAATGATAATTCTGCAGAGCAGTCTCTGCCTTTAGAACCTCCTGGCATTTGTGATTACG ACATGGAGAGTAGTGATGAGTTGCTCCGGATTGGTGATCAGTATCAGGTTCCAATCCCATCTCTCGTTACCAAATCGAGATACATCTCACAGACGCAACA ACTGTTACCTAGTTTTTCAGTGGGGCTGCCTATTTCCATAATGTGGATCAAGGAGCAAGGCGAGACGATCAAGAAGGAATTAGATGACTTCCTTAATGAT TTGGCTGATCCTGTTAAATCTGAGAGCTTTCAAGTGGATACATTTACGGAAAGCGATGTGAAAGCTATGACTGTTGATGAAGTGGGGAAATGTGGAAGCA AAAGTTACCATTTGGTTCCTGGTGATTCTGATGAAGAATGGAATGATGTGGATCAGGCGAGTTTTGTGCTAGGTTTATATATTTTCGGGAAGAATCTAGT TCAAGTGAAGAATTTTGTTGAGACAAAGTCAATGGGTCAGATACTGTCCTTTTACTATGGGAAATTCTATAGGTCCCATAGATATCGTAGATGGTCCGAG TGTGGCAAACTCAAAGGCAGGAAAAGGATGTTTGGCCAAAGGATCTTTACCGGATCGAAGCAGCACGAGCTCTTGTCTCGTTTGATTCCTCATGTATCCG AGGAATCCCAAATCACTTTGCACAAGGCGGCTAAGTCTTTCGGAGAGGGAAAGATGATGCTAGAAGAATATGTATTTGCTATAAAGGCTGAAGTTGGCTT GAATGCCCTTGTAGAGGCAGTTGGTATTGGTAAAGGGAAGCAAGACCTCACAATTACTGCCATGGATTCCCTTAGGTCGAATCATGTTACTGCTGTTCGG CCCGAGATACCTGTTGGCAAAGACTGCTCAAAGCTAACACCTTTAGAGATAGTCAATATTCTAACAGGAGGTCATCGGCTCAGCAAGGCCAGATCGAATG ATATCTTCTGGGAAGCAGTTTGGCCTCGATTACTTGCTCGAGGATGGCGTTCGGAGCAACGAAAGGATGGGTTTTTCAGGAACTCTCTGGTCTTTATAGT CCCTGGTGTTAAGAAGTTTTCAAGAAGGAAATTAGTGAAAGGAGACCACTACTTTGATTCAGTCGCTGATGTCTTGAACAAAGTTGCTTCCGATCCATCG CTTCTTGAGCTTGATGGTATCGAAAACAACAACGAAGTAAATGAATGGAACAAAGGTACAAACTTTGACCAAGAAGATGATTCCAATGGTAAGGAGGAGC GCCATTGTTACCTCAAACCGAGGAGCTCGAAAGTTCATAATAGCAGTGGTGGTATGAGTTTCACAATTGTTGATACAAGTCACAAAAGCAAAATAACTCA ATTAAAAAGGTTGCCAGATGAGGTGATGAATTTTTCCTTCCCCATAAGAGATTCTGAAGATAGTAGCGATGACGATTCTTCTTCAGAAGAACCCACGGAA GAAGAATCATACTCAGAAGGTAATTCAAGTGGCGATGAGGATAAAGCTAAGAGGAAATTTTCAAAGTCAGTGTCTTTTGACAGCCATTTTCACGGAAATT TCCTTGTAAATGGCTACAGCAACAAGGCAGCAAGTATCTCAATAGATGGAAGAGCTAATAAGACTACCATCATGAAACTGCAGCCAAGAAAGAATGCAAA TCCTCAAGCTATCAGGAAAAGAAAGCCCAACAATGGAAATGTTGCAGCCCCAGCTGCAAAACGGCAGCAGCAGAAAGCATTGCCTTGGGACTCAAGCAAG GTACATTTCAGAACATATGATGAATTAGTTGGTGTGAGTAGATCTTCATCTAGAGGAAACAGTCCGAATAGCAGCGATGTATGCCACATCACTGACATCA GCACTACTTACTCGGGTGCTGAGCATTCTAATGAACACCCTCCTCAATCCACCAAGGCATTGATTGACCTGAATATACCTGTTCCTCAAAGCATGGAACC TGAAATGGAAGATAGAAAGAAGAATGAGCAGCCAGAGGATTCTGGGGTGTCAAAGTCGTCAAATTTAGCTTGTTCGGGTTCTAATCCTCAGCAGCAACAA CCTGAGACGAACTCGAGAAGACACAGTACTAGAAACCGTCCACTGACAACCAAGGCATTAGAGGCTCTTGCTTGTGGGTTTTTAAGCTTCAAGCCCAAAA AAGAACCCCGGAAATCGAAACAACGTTCTAGACGATCGAAGAGTAAGGGTGCAGTAGTCAGCAGCAGTAGTAACATTGGCTCCGAGATTGCGGATTTCAA AGGCGGAGATGAACTGGAAAGTTGTGTGACCAAAGGTAGCAGCGACATTGTTGATGAGCTCCAAGGAGTGAACACCATTGAATTTAAATGA
AA sequence Show only first row Show all	>Lus10006519 pacid=23141634 polypeptide=Lus10006519 locus=Lus10006519.g ID=Lus10006519.BGIv1.0 annot-version=v1.0 MDEIQLDGIGSLNANDNSAEQSLPLEPPGICDYDMESSDELLRIGDQYQVPIPSLVTKSRYISQTQQLLPSFSVGLPISIMWIKEQGETIKKELDDFLND LADPVKSESFQVDTFTESDVKAMTVDEVGKCGSKSYHLVPGDSDEEWNDVDQASFVLGLYIFGKNLVQVKNFVETKSMGQILSFYYGKFYRSHRYRRWSE CGKLKGRKRMFGQRIFTGSKQHELLSRLIPHVSEESQITLHKAAKSFGEGKMMLEEYVFAIKAEVGLNALVEAVGIGKGKQDLTITAMDSLRSNHVTAVR PEIPVGKDCSKLTPLEIVNILTGGHRLSKARSNDIFWEAVWPRLLARGWRSEQRKDGFFRNSLVFIVPGVKKFSRRKLVKGDHYFDSVADVLNKVASDPS LLELDGIENNNEVNEWNKGTNFDQEDDSNGKEERHCYLKPRSSKVHNSSGGMSFTIVDTSHKSKITQLKRLPDEVMNFSFPIRDSEDSSDDDSSSEEPTE EESYSEGNSSGDEDKAKRKFSKSVSFDSHFHGNFLVNGYSNKAASISIDGRANKTTIMKLQPRKNANPQAIRKRKPNNGNVAAPAAKRQQQKALPWDSSK VHFRTYDELVGVSRSSSRGNSPNSSDVCHITDISTTYSGAEHSNEHPPQSTKALIDLNIPVPQSMEPEMEDRKKNEQPEDSGVSKSSNLACSGSNPQQQQ PETNSRRHSTRNRPLTTKALEALACGFLSFKPKKEPRKSKQRSRRSKSKGAVVSSSSNIGSEIADFKGGDELESCVTKGSSDIVDELQGVNTIEFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09040			unknown protein		Lus10006519 [exp]	0	1
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Lus10033830 [exp]	6.3	0.8675
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	9.0	0.9095
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	12.3	0.9012
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	13.6	0.8896
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10037283 [exp]	17.4	0.8882
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	17.9	0.8358
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	19.6	0.8801
AT5G50090			unknown protein		Lus10004229 [exp]	24.0	0.8573
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	29.7	0.8748
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	31.6	0.8657

Compare expression of checked genes

Lus10006519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.