Plant FIBer expression Database

Lus10006520 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21400 167 / 6e-53 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037507
[exp]
347 / 1e-123 AT3G21400 163 / 3e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G210100
[exp]
223 / 1e-74 AT3G21400 204 / 1e-67 unknown protein
Potri.010G024000
[exp]
0 / 1 AT3G21400 0 / 1 unknown protein
PFAM info
Representative CDS sequence
>Lus10006520 pacid=23141655 polypeptide=Lus10006520 locus=Lus10006520.g ID=Lus10006520.BGIv1.0 annot-version=v1.0
ATGGGTCAGGCATTTCGTCGAGCATCTGGCAGACTCCGAGTTCCCGATCCATCTCCCAAGGTGGTTACCGACCGTAGACCGCCAGGACCTCCCGCCGACA
AGGTTGAAGAGCTCTCTAGGAAGGCTACCCAGCTCAACGATCAGAGTATTCATGCTGCTGATGATGATCCAAGATTTAATGCTGATAATGTCCTTGAAGA
AAAGGATCCACAGTTTGATGCAATGCTCGGCCAAATGGTTGGGAGAATTAAAACAAAGCCTGGAGGGAAACCTGAGATGGGTGAGGCAACTATAGTAGAA
AGGTCTCACAAGCCATTGCCAAAGCTGCGTAATACAAAAGCTAACGCCGGCAGATACGAAGAGAGACCTGTTCCCCCAGGAACTCTGAACGTGGCTCAGC
TCCGCCATATACTCAAACTGCACGCAGGCAAGGGCGGTGAAGGGGACAAGGAAGGGTCGGTCGATGTCCAACAAATATCTCAACAGTTCAGGCTTGAAGT
AGAACAAGTGAATAAGTTCTTGCAGTTTGTATCACTTCCCCCGGAAGATAGCACGAAAAAGGGCGTCGAATGA
AA sequence
>Lus10006520 pacid=23141655 polypeptide=Lus10006520 locus=Lus10006520.g ID=Lus10006520.BGIv1.0 annot-version=v1.0
MGQAFRRASGRLRVPDPSPKVVTDRRPPGPPADKVEELSRKATQLNDQSIHAADDDPRFNADNVLEEKDPQFDAMLGQMVGRIKTKPGGKPEMGEATIVE
RSHKPLPKLRNTKANAGRYEERPVPPGTLNVAQLRHILKLHAGKGGEGDKEGSVDVQQISQQFRLEVEQVNKFLQFVSLPPEDSTKKGVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G21400 unknown protein Lus10006520
[exp]
0 1
AT5G07590 Transducin/WD40 repeat-like su... Lus10042992
[exp]
3.0 0.8449
AT4G27490 3'-5'-exoribonuclease family p... Lus10037395
[exp]
3.0 0.8803
AT2G40290 Eukaryotic translation initiat... Lus10007521
[exp]
3.7 0.8709
AT5G45770 AtRLP55 receptor like protein 55 (.1) Lus10039985
[exp]
3.9 0.8361
AT1G09390 GDSL-like Lipase/Acylhydrolase... Lus10001522
[exp]
4.5 0.8579
AT3G21400 unknown protein Lus10037507
[exp]
4.9 0.8708
AT5G07900 Mitochondrial transcription te... Lus10040820
[exp]
8.0 0.8473
AT3G49910 Translation protein SH3-like f... Lus10028537
[exp]
11.1 0.8667
AT2G42520 P-loop containing nucleoside t... Lus10000848
[exp]
13.4 0.8316
AT4G29870 Oligosaccharyltransferase comp... Lus10003228
[exp]
14.1 0.8522

Lus10006520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.