Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48970 527 / 0 Mitochondrial substrate carrier family protein (.1) AT3G21390 479 / 1e-171 Mitochondrial substrate carrier family protein (.1) AT4G01100 150 / 1e-42 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 139 / 1e-38 Mitochondrial substrate carrier family protein (.1) AT3G53940 135 / 6e-37 Mitochondrial substrate carrier family protein (.1) AT3G55640 133 / 2e-36 Mitochondrial substrate carrier family protein (.1) AT4G32400 127 / 1e-33 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G51870 120 / 5e-31 Mitochondrial substrate carrier family protein (.1) AT4G26180 119 / 5e-31 Mitochondrial substrate carrier family protein (.1) AT5G56450 114 / 4e-29 PM-ANT Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037508 [exp] 570 / 0 AT5G48970 463 / 7e-165 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 152 / 4e-43 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 148 / 1e-41 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 142 / 1e-39 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 138 / 5e-38 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10022597 [exp] 135 / 9e-37 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 134 / 1e-36 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 133 / 3e-36 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 123 / 2e-32 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210000 [exp] 553 / 0 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 548 / 0 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 151 / 4e-43 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 150 / 2e-42 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 147 / 1e-41 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 146 / 6e-41 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 134 / 2e-36 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 132 / 7e-36 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 132 / 9e-36 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 130 / 4e-34 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10006521 pacid=23141627 polypeptide=Lus10006521 locus=Lus10006521.g ID=Lus10006521.BGIv1.0 annot-version=v1.0 ATGGAGGACCAGCCGGGGCAGCTGAAGCGGGCCTTGTTGGACGCAACTGCCGGCGCGATTGCCGGTGGGATATCTCGTACCGTCACTTCGCCTCTCGATG TTATCAAAATCAGATTCCAGGTTCAGCTGGAGCCTACTACTTCTTGGGCTTTGATCAACAGAAACGTGGCTGCTCCATCCAAGTATACAGGAATGCTGCA AGCCAGCAGGGATATTCTTAGAGAAGAAGGCTTAGCGGGGTTCTGGCGTGGTAACGTTCCAGCTCTTCTCATGGTTATGCCATACACTGCCATACAATTT GCCGTATTACACAAGTTGAAATCATTTGCTTCTGGATCTTCTAAAGCAGTGGATCACATTCACTTGAGTCCCTATTTGTCCTACGTCAGTGGCGCTTTAG CAGGATGTGCAGCTACTGTTGGATCATATCCATTTGATCTTCTACGCACCATTTTGGCTTCTCAAGGTGAACCCAGGGTGTATCCCACGATGAGATCTGC ATTTGTGGATATTGTCAGAACTCGCGGATTTAAAGGCTTATATGCAGGATTGTCCCCAACACTAGTTGAGATTGTACCTTATGCAGGGCTTCAGTTTGGT ACCTATGACACCTTCAAGCGCTGGGCAATGGAGTGGAATCATCACAGATCTAACACAATGGCCACTGATGATAACCTTTCGAGCTTCCAGCTTTTTATTT GTGGAATAGCTGCTGGGACTTGCGCTAAACTTATTGAAGGACTTCAGAGGCACCCGAAATACGGTGCAAGGGTCGAACGCCATTCTTACAGAAACATGTT TGATGGCCTACGCCAAATCATGCTAGCAGAAGGCTGGGGTGGTCTGTACAAGGGCATTCTGCCGTCCACAGTGAAGGCTGCTCCAGCTGGTGCCGTAACG TTTGTAGCTTACGAAATGGCGTCTGATTGGCTAGAATCTGTCTGGACTTGA
AA sequence Show only first row Show all	>Lus10006521 pacid=23141627 polypeptide=Lus10006521 locus=Lus10006521.g ID=Lus10006521.BGIv1.0 annot-version=v1.0 MEDQPGQLKRALLDATAGAIAGGISRTVTSPLDVIKIRFQVQLEPTTSWALINRNVAAPSKYTGMLQASRDILREEGLAGFWRGNVPALLMVMPYTAIQF AVLHKLKSFASGSSKAVDHIHLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPRVYPTMRSAFVDIVRTRGFKGLYAGLSPTLVEIVPYAGLQFG TYDTFKRWAMEWNHHRSNTMATDDNLSSFQLFICGIAAGTCAKLIEGLQRHPKYGARVERHSYRNMFDGLRQIMLAEGWGGLYKGILPSTVKAAPAGAVT FVAYEMASDWLESVWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	0	1
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	1.0	0.8684
AT1G53710			Calcineurin-like metallo-phosp...		Lus10036645 [exp]	1.7	0.8289
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	3.2	0.8321
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	4.5	0.8191
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	10.5	0.7959
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	11.3	0.7742
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	12.4	0.7663
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	16.5	0.7614
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	19.6	0.7852
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	20.2	0.7479

Compare expression of checked genes

Lus10006521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.