Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20660 55 / 9e-09 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT5G27230 43 / 0.0001 Frigida-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033829 [exp] 79 / 5e-18 ND / Lus10027765 [exp] 75 / 2e-15 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10014801 [exp] 63 / 3e-11 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10013330 [exp] 59 / 5e-10 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10005217 [exp] 57 / 2e-09 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10033831 [exp] 42 / 0.0003 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10035529 [exp] 0 / 1 ND 39 / 0.001
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130533 [exp] 54 / 3e-08 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.005G044200 [exp] 45 / 3e-05 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.007G050800 [exp] 44 / 3e-05 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10006522 pacid=23141633 polypeptide=Lus10006522 locus=Lus10006522.g ID=Lus10006522.BGIv1.0 annot-version=v1.0 ATGAACGTGGTGAATGAGGAGACCAACTTGTACGCGAACGTGCTAGTCAACGCGATGACGGAGATGCCGTTGTACCTGTTGACGTCGGCTATGCTGGAGC AGTTCGGGAGGAAGTCGCTGGCTATCGAGACCCATTGCTATTATTGGTCTCACCAGAGAGGTCCTGAGGTGAAAGCTGCAACACTAGAACTGGCTGTTAG TTGGAAAGGAAATTTAGGACAACAAGGTCAAAGTTCAAAGGATGTATTGGCATTCTTGTTGTTTTTGGCTGCATTTGGCGTCACCTGCCATTTTGAAGCA GAGGATATGGTTGAACTAGTTGCCATGATTACTGACCAAGAAAGCGCTCCTGAGCTATGTCGCTCTCTTGGACTTGTGGAGTCCATACCAGCTTTACCGG AAGAGGTGTCCAGACTTGGCGTGGATCCAAGTTTCGTAATGGAGAAGATCAGAGAGCATCTCGGCCATCTGGAAGCCATAACAGGGAAGAAAAGAAGTTG CTTGCTAGTTGTTCGCATTGTTATGAACACCCCAAAGCATGGTGACTATGCAACAGGTTCTGGCAACAATGGCAGAGCAACAGTTTCAGGCAGCAAGTGG CCATGGCAGTTGGCACATTTAACCGGGGAAAAGCAGAGCAACAAGCGGCAGAAGCGTTGTTGA
AA sequence Show only first row Show all	>Lus10006522 pacid=23141633 polypeptide=Lus10006522 locus=Lus10006522.g ID=Lus10006522.BGIv1.0 annot-version=v1.0 MNVVNEETNLYANVLVNAMTEMPLYLLTSAMLEQFGRKSLAIETHCYYWSHQRGPEVKAATLELAVSWKGNLGQQGQSSKDVLAFLLFLAAFGVTCHFEA EDMVELVAMITDQESAPELCRSLGLVESIPALPEEVSRLGVDPSFVMEKIREHLGHLEAITGKKRSCLLVVRIVMNTPKHGDYATGSGNNGRATVSGSKW PWQLAHLTGEKQSNKRQKRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27230			Frigida-like protein (.1)		Lus10006522 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	2.4	0.9026
AT2G20495			unknown protein		Lus10024909 [exp]	2.6	0.8587
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10032010 [exp]	3.5	0.9084
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	8.5	0.8493
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	9.5	0.8833
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	10.7	0.8068
AT2G17280			Phosphoglycerate mutase family...		Lus10001381 [exp]	11.2	0.8182
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	18.2	0.8594
					Lus10018837 [exp]	18.4	0.8646
					Lus10008178 [exp]	21.1	0.7468

Compare expression of checked genes

Lus10006522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.