Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16510 138 / 4e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 111 / 9e-29 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G09070 103 / 3e-25 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT3G62780 84 / 2e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15740 74 / 1e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 59 / 6e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G55470 55 / 5e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G05440 50 / 1e-07 C2 domain-containing protein (.1) AT2G33320 52 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 51 / 5e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004500 [exp] 132 / 4e-37 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10029901 [exp] 127 / 2e-34 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10003570 [exp] 60 / 6e-10 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 58 / 2e-09 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005867 [exp] 48 / 5e-06 AT1G07310 206 / 3e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 45 / 5e-05 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040291 [exp] 43 / 8e-05 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10008731 [exp] 44 / 0.0001 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040692 [exp] 42 / 0.0003 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G024200 [exp] 172 / 5e-52 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 150 / 1e-43 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G018600 [exp] 120 / 5e-32 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1) Potri.005G026700 [exp] 116 / 2e-30 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1) Potri.003G160400 [exp] 83 / 9e-18 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G070400 [exp] 81 / 2e-17 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G107175 [exp] 64 / 1e-11 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 55 / 2e-08 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 54 / 4e-08 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 54 / 5e-08 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10006523 pacid=23141632 polypeptide=Lus10006523 locus=Lus10006523.g ID=Lus10006523.BGIv1.0 annot-version=v1.0 ATGGAGCAAATGACCTTAGAGATCAACCTCGTATCCGCCCAACGTCTCAAGAACGTCAACCTCATGTCCAAGATGGACGTCTACGCCTCCGTTTCCATCT CCGGCGTCCCAAACCACCCTTCCGATCAGTCCTTCACTTCCCCAGTCGACCGTACCGGCGGCGACAACCCCACCTGGAATTTCCCAGTCAAGTTCACCGT CGACGCCGAGCAGAACCACCACCTCAGCCTGGTCGTCAAGCTTCGCTGCGAGCGCGGCCTTCTCAGCGATAAAGACGTCGGCGAAGTCGTCGTCCCGATC AAGGAGCTCCTCGACGGTGGCGGGAGGGGTACGTTGCAGTTCGTCAGCTACCAAATCCGCCGCCCCTCTGGGAAATCTGGTGGCGAATTGACATTCTCGT ACAAATTCAACGACCAGTCCTACTCCGATGCCGCAAAATCAGAGCTGGTGAAGTCCGATGAACCAGCTGCTGTCAGCGCTTATCCTGCTATTGTGATGGG GCCCACCAGCACGAGCTACAGTGGGGAATACCCGCCTCCTCCTCCTACTCTTCTGCCTGCTGTTGCGGCGGGATACGGCTGCCACCCTCCGCCGCCGCCG GTGCAGTACGTCTGTTATCCTCCGGCGCCGCCAGCGGGCTACGGGTACAGTTACTACCCGCCACCTCCTCCGGCTGGATACGGGTACCCTCCGGTTCAGG CTACTGGGTATGGATACGGATACCCGCCGTCAGTGGTTCAGCCGCAGAAGAAGAACAAGTTTGGGATGGGATTAGGGGCCGGATTGCTTGGGGGAGCCCT TGGCGGGCTTTTGATCGGAGATGCTGTGTCCGACGTGGCGGCGTATGATGTCGGGTACGATTCCGGATTCGCCGATGCCGGTGGATTCGGGTTTTAG
AA sequence Show only first row Show all	>Lus10006523 pacid=23141632 polypeptide=Lus10006523 locus=Lus10006523.g ID=Lus10006523.BGIv1.0 annot-version=v1.0 MEQMTLEINLVSAQRLKNVNLMSKMDVYASVSISGVPNHPSDQSFTSPVDRTGGDNPTWNFPVKFTVDAEQNHHLSLVVKLRCERGLLSDKDVGEVVVPI KELLDGGGRGTLQFVSYQIRRPSGKSGGELTFSYKFNDQSYSDAAKSELVKSDEPAAVSAYPAIVMGPTSTSYSGEYPPPPPTLLPAVAAGYGCHPPPPP VQYVCYPPAPPAGYGYSYYPPPPPAGYGYPPVQATGYGYGYPPSVVQPQKKNKFGMGLGAGLLGGALGGLLIGDAVSDVAAYDVGYDSGFADAGGFGF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	0	1
AT1G13360			unknown protein		Lus10034310 [exp]	2.4	0.8582
					Lus10012576 [exp]	2.6	0.8213
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	3.5	0.8402
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	4.2	0.8488
AT5G64230			unknown protein		Lus10033177 [exp]	5.7	0.8381
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	6.0	0.8254
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10005766 [exp]	6.2	0.8002
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	6.3	0.8082
AT5G25280			serine-rich protein-related (....		Lus10006660 [exp]	7.1	0.7416
AT4G31330			Protein of unknown function, D...		Lus10026976 [exp]	11.1	0.7484

Compare expression of checked genes

Lus10006523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.