Gene [FLAX] | FIBexDB

Lus10006526 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10024976 [exp]	181 / 2e-55	AT1G40087	91 / 5e-20	Plant transposase (Ptta/En/Spm family) (.1)
Lus10014862 [exp]	169 / 1e-53	ND	/
Lus10032838 [exp]	167 / 4e-52	AT1G40087	46 / 9e-06	Plant transposase (Ptta/En/Spm family) (.1)
Lus10003828 [exp]	107 / 4e-29	ND	/
Lus10021587 [exp]	97 / 2e-24	AT1G40087	42 / 1e-04	Plant transposase (Ptta/En/Spm family) (.1)
Lus10035238 [exp]	95 / 4e-24	AT1G40087	42 / 2e-04	Plant transposase (Ptta/En/Spm family) (.1)
Lus10035253 [exp]	92 / 5e-23	ND	/
Lus10025346 [exp]	90 / 4e-22	ND	/
Lus10010603 [exp]	80 / 2e-18	ND	/

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF03004 [flax] [poplar]	Transposase_24	Plant transposase (Ptta/En/Spm family)

Representative CDS sequence

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>Lus10006526 pacid=23140011 polypeptide=Lus10006526 locus=Lus10006526.g ID=Lus10006526.BGIv1.0 annot-version=v1.0

ATGGTAGAAGCTCACAAGTATTGGGATCAAAATGTAGGACGACTTTGGGGGAAGTCAAGGGTCAGAACTTGGCGAGCCAAGATGAAAACTATGCAAGAAA

AGCAACTCCCACCTAAGTGGATTGTTAATAATCCACCGAAAGGCTGTCCAATGGCAGATTGGATGACATTCTTGGATCGAGTAAATGGTGATGATTTTGA

GAGAAACGAGGAAAATCGGACACTCCAGAAGGAAAATCATAGAGGAGGATCGAGACCGTGGGGTAGATATATCAAGGAGAAAATTGAGAAGACTGGTAAG

CCTCCCTCTAGAGGTCAGATGTTCATCAAGTGGCTGGATGGATCTTTCAAGTCAGAGCATGCTAGAGTTGTTGCGGTTTACACAAAGAATTATGAAAGAT

CTAATTTCATCGATCTTGTCGAGAACTTGATTCGCCGTCTTGATTATTTGGCTGATCCAGAGCTCCTTGAAGTCGTCTTCTTGTTGCTCTTGAATCTGTC

TCTAAAGCTCTCCATTTTGTTCAGGAAGTCTGTCTCGAATGAGAGAGGACCGGGTTTTAAATGGAAGTTCCCAAAAAATCCTTCAATTTTCCGGAATGTC

AACTTTGCCGCTATGGTTGGTCAATCTTGCCGCTATGCACATAGCAACAAAGTTGACACCCCATAG

AA sequence

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>Lus10006526 pacid=23140011 polypeptide=Lus10006526 locus=Lus10006526.g ID=Lus10006526.BGIv1.0 annot-version=v1.0

MVEAHKYWDQNVGRLWGKSRVRTWRAKMKTMQEKQLPPKWIVNNPPKGCPMADWMTFLDRVNGDDFERNEENRTLQKENHRGGSRPWGRYIKEKIEKTGK

PPSRGQMFIKWLDGSFKSEHARVVAVYTKNYERSNFIDLVENLIRRLDYLADPELLEVVFLLLLNLSLKLSILFRKSVSNERGPGFKWKFPKNPSIFRNV

NFAAMVGQSCRYAHSNKVDTP

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006526 [exp]	0	1

Lus10006526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.