Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13970 73 / 3e-17 APG12B, APG12 AUTOPHAGY 12 B, AUTOPHAGY 12, Ubiquitin-like superfamily protein (.1) AT1G54210 71 / 1e-16 ATATG12, APG12, ATG12a AUTOPHAGY 12 A, AUTOPHAGY 12, Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000432 [exp] 103 / 3e-29 AT3G13970 154 / 9e-51 AUTOPHAGY 12 B, AUTOPHAGY 12, Ubiquitin-like superfamily protein (.1) Lus10008255 [exp] 59 / 3e-10 AT1G48120 49 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169700 [exp] 89 / 2e-23 AT1G54210 152 / 7e-50 AUTOPHAGY 12 A, AUTOPHAGY 12, Ubiquitin-like superfamily protein (.1.2) Potri.003G064300 [exp] 85 / 6e-22 AT1G54210 154 / 2e-50 AUTOPHAGY 12 A, AUTOPHAGY 12, Ubiquitin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF04110 [flax] [poplar] APG12 Ubiquitin-like autophagy protein Apg12
Representative CDS sequence Show only first row Show all	>Lus10006527 pacid=23140014 polypeptide=Lus10006527 locus=Lus10006527.g ID=Lus10006527.BGIv1.0 annot-version=v1.0 ATGGCAGCTGAGGCGGCGAGTTCCGCACAGAAAGTGATTGTTCAGTTGAAAGCCACTGCCGATGTTCCTATACTCAAGCAAACGAAGTTTAAGATGCTTC GAACCGATAAATTTGCCAAGGTGATCGACTTCTTGCGTCGTCAACTTCATAGAGAAACAGTGGTTAATATGATCGTACTCCCTTGTTCGGCTATCTCTTG GGATGCACTGGGGAATTCAACCATATACCTTACAGAACCTGGGTTTTACTGGGGATCAATTTCAGAAGGGTACATTCCTGAATGGTTTAGAAAGGATAAC CTAAAACTGTCAGAATTCAAATTGGAAGAACCGTTGGTAGTTTGTCCTTCTGCTGTCTTTGTTTGGCTTAATGAGCTATTTGAAGACCGTGGAGGCCGTT GGAAGAAAGGAGAAACGAGTTTGGGGTCGAAGCCCATAAGTGGACTCGTTAAGGTGATGTCGGAGCGTCCGATGCGAGACTTCTTCAACAATTTTGAGCC CAAACCAATTTAG
AA sequence Show only first row Show all	>Lus10006527 pacid=23140014 polypeptide=Lus10006527 locus=Lus10006527.g ID=Lus10006527.BGIv1.0 annot-version=v1.0 MAAEAASSAQKVIVQLKATADVPILKQTKFKMLRTDKFAKVIDFLRRQLHRETVVNMIVLPCSAISWDALGNSTIYLTEPGFYWGSISEGYIPEWFRKDN LKLSEFKLEEPLVVCPSAVFVWLNELFEDRGGRWKKGETSLGSKPISGLVKVMSERPMRDFFNNFEPKPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10006527 [exp]	0	1
AT5G59210			myosin heavy chain-related (.1...		Lus10016491 [exp]	2.2	0.9443
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	8.8	0.9355
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10019791 [exp]	9.5	0.9165
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	11.1	0.9379
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	11.5	0.9223
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	12.7	0.9307
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	13.0	0.9328
AT1G72510			Protein of unknown function (D...		Lus10015670 [exp]	13.0	0.9116
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	13.2	0.9291
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	13.9	0.9337

Compare expression of checked genes

Lus10006527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.