Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17440 237 / 6e-70 CKH1, TAF12b, EER4 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) AT3G10070 139 / 3e-35 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001251 [exp] 278 / 3e-91 AT1G17440 115 / 2e-29 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Lus10003250 [exp] 140 / 2e-35 AT3G10070 325 / 8e-105 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) Lus10035601 [exp] 130 / 1e-31 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169900 [exp] 275 / 7e-85 AT1G17440 267 / 2e-80 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.003G064100 [exp] 268 / 3e-82 AT1G17440 266 / 1e-79 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.006G083500 [exp] 134 / 7e-34 AT3G10070 298 / 3e-95 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF03847 [flax] [poplar] TFIID_20kDa Transcription initiation factor TFIID subunit A
Representative CDS sequence Show only first row Show all	>Lus10006528 pacid=23140007 polypeptide=Lus10006528 locus=Lus10006528.g ID=Lus10006528.BGIv1.0 annot-version=v1.0 ATGTCACGTCTTAGCCAAATGAACCAGCAGCAGCAGCAGAACCAGTTTGGCGGCGTTCTGAGGCAGCAGCAGCAGCAGGGGATTTATGGGCAAATGAATT TTGGGGCTGCTGGGTCAGCCTCACTTCAACAGAGTTTGCAGCAGAATTCTCAGAATCAAATGGGGGTTGGTGGTAATACTGCTCCCAATTTGCCTCGCTC TGCTCTACTTGGACAGACTGGCCACCTCCCCATGTTGACCGGGGCCTCCACTGGTCACTTGAGCTTGCAATCTCAGTTATTGACCTCCCCAAGGCAGAAA GCTGGATTGGGGCAAGGATCTCAATTCCATTCAGGAAATCCTGCAGGGCAGTCAATACCAGGCATGCCTGGAGTGGGAATGATGGGATCACTTAATCTCA CCTCCCAATTAAGACCTAATGGTGCACTTGGATATGCTCATCAGAGGACGATGAATGCAGGACAGTTGCGGCAGCAACTTGCCCAGCAAAATACCCTGAG CTCCGCACAGGCATGCCATTCTTATACTTGTCATCTCTTCTTTTCAGATAATCAACAATTTTTCAGTTTTGTTACAAATTTAGCTAGGACATCTTCATTG GCGTTTATGAACCCTCAGTTGTCTGGGCTAGCTCAGAATTCACCCCAAGCTCTTATGCAGAACACTTTGTCACAGCAGCAGTGGCTGAAGCAAATGCCAG CATTGTCTGGTCCTGCTTCTTCCTCATACCGCCTTCAACAGCAGCGCCAGTCCCAAGGACACTTGCAGCAGCAACTGGCATCATCTTCTCAGTTGCACCA AAACTCCATTGCATTTAATCAACAGCAACTGTCCCAGCTGGTACAGCAGCAATCAAATATGACTCACCAACAGTTACAGCAGCTACAGCAACCACAGCAG CAGCAGCAGCTACTCCAACAGCAATCGTCACAACAACTGCAACAGCTTCCTGTGCATCAGCAGCAGCAATCTCCGAAAATCCAGGGACCAGCTGGTCAGA AATCAGTTAGTTTAACTGGATCGCAGCCAGACGCCACCGCATCTGGTACAAGTACAACCACTCCAGGAGGAAGTTCAAGCCAAGGAACAGAAGCAACTAA TCAACTTCTCGGAAAAAGAAAGATACAAGACTTAGTTTCCCAGGTGGATTCTCAGGGAAAGCTAGATCCAGATGTCGAAGACCTTCTTTTGGAGATGGCT GATGACTTTATTGATTCTGTGACAACGTTCGCATGTAATTTGGCCAAGCACCGGAAGTCCTCAACTTTGGAGTCCAAGGACCTATTGCTGCATTTAGAGA AAAACTGGCACTTGACAGTTCCTGGATTTTCAACTGAGGATCCGAAACAACAAAGGAAACCGCTACAAAACGACCTCCACAAGAAGCGACTTGATATGGT GCGTGCGTTGATGGAGTCTGCGCATTCCGAAACAAATAACAATAACGTAAATAACCCGAATAACCCAAAAGAGGCAGGAATCAGCAACTCTGCGGTTAGC AACCACCTGCTGAGACCTTCAATAAGTTCAGATCAGCTGGTCTCACAACAAAACGCTAATCAGATGTTGCAGCAAATGACACGATTTTGA
AA sequence Show only first row Show all	>Lus10006528 pacid=23140007 polypeptide=Lus10006528 locus=Lus10006528.g ID=Lus10006528.BGIv1.0 annot-version=v1.0 MSRLSQMNQQQQQNQFGGVLRQQQQQGIYGQMNFGAAGSASLQQSLQQNSQNQMGVGGNTAPNLPRSALLGQTGHLPMLTGASTGHLSLQSQLLTSPRQK AGLGQGSQFHSGNPAGQSIPGMPGVGMMGSLNLTSQLRPNGALGYAHQRTMNAGQLRQQLAQQNTLSSAQACHSYTCHLFFSDNQQFFSFVTNLARTSSL AFMNPQLSGLAQNSPQALMQNTLSQQQWLKQMPALSGPASSSYRLQQQRQSQGHLQQQLASSSQLHQNSIAFNQQQLSQLVQQQSNMTHQQLQQLQQPQQ QQQLLQQQSSQQLQQLPVHQQQQSPKIQGPAGQKSVSLTGSQPDATASGTSTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKLDPDVEDLLLEMA DDFIDSVTTFACNLAKHRKSSTLESKDLLLHLEKNWHLTVPGFSTEDPKQQRKPLQNDLHKKRLDMVRALMESAHSETNNNNVNNPNNPKEAGISNSAVS NHLLRPSISSDQLVSQQNANQMLQQMTRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10006528 [exp]	0	1
AT2G32970			unknown protein		Lus10035309 [exp]	2.8	0.9093
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	5.0	0.9111
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	8.1	0.9083
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	14.2	0.8909
AT4G10930			unknown protein		Lus10023068 [exp]	14.5	0.8776
AT2G30880			Pleckstrin homology (PH) domai...		Lus10029819 [exp]	18.0	0.8632
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	19.4	0.8918
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	19.7	0.8715
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10041998 [exp]	20.1	0.8814
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10015186 [exp]	22.2	0.8854

Compare expression of checked genes

Lus10006528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.