Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 201 / 2e-64 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000372 [exp] 352 / 1e-123 AT5G57500 300 / 2e-101 Galactosyltransferase family protein (.1) Lus10000407 [exp] 216 / 1e-71 AT5G57500 211 / 2e-68 Galactosyltransferase family protein (.1) Lus10006963 [exp] 201 / 4e-64 AT5G57500 470 / 2e-168 Galactosyltransferase family protein (.1) Lus10019998 [exp] 198 / 9e-63 AT5G57500 475 / 3e-170 Galactosyltransferase family protein (.1) Lus10015527 [exp] 192 / 1e-60 AT5G57500 473 / 2e-169 Galactosyltransferase family protein (.1) Lus10025474 [exp] 114 / 6e-32 AT5G57500 199 / 4e-64 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131000 [exp] 255 / 5e-85 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1) Potri.018G094000 [exp] 202 / 2e-64 AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006531 pacid=23140009 polypeptide=Lus10006531 locus=Lus10006531.g ID=Lus10006531.BGIv1.0 annot-version=v1.0 ATGGTTCTAGCCGTGCTTTCCCCATTTCTTGCTCTATCCTTATTCTTCATTATCTACATCTTCTTCAATATCCGGGTAAGATCTTTTCTGCCATCTTCAT CATCTAACGACTCTGTTACCAGCAACAATGGAAGGAATCTGATACAGACCAGATTCAGCCTCTTAATTGGCATCTTCACTCGTCCGGATAGTTATGATCG TCGGCATTTCCTTCAACTAGTCTACGGAATACAGGCATCCCCCGTAGCGGACATAGACATCAAATTTGTATTCTGCAATCTCACAAAGCATGAACAAAGG GTGCTCGTGGGTCTAGAAATACTTCGTTTCACCGACATCATAATCCTTGACTGCACTGAGAATATGAACAATGGGAACTCCTACACCTACTTCTCTTCGC TACCCCATATTTTGCAGCACAATTATGACTATGTAATTAAAGCTGATGATGATGTTTACCTTAGGCTTCACCCATTGTCCGCTTCGTTATACCCATTGCC AAGGCAAGATTTGTACTATGGTTTTGTTATCCCTTGCAATACCATGAACCCGTTGGTTGAGTACATGTCAGGAATGGGGTTCTTACTGTCTTGGTTCCCA CGAGCTTATACCTGA
AA sequence Show only first row Show all	>Lus10006531 pacid=23140009 polypeptide=Lus10006531 locus=Lus10006531.g ID=Lus10006531.BGIv1.0 annot-version=v1.0 MVLAVLSPFLALSLFFIIYIFFNIRVRSFLPSSSSNDSVTSNNGRNLIQTRFSLLIGIFTRPDSYDRRHFLQLVYGIQASPVADIDIKFVFCNLTKHEQR VLVGLEILRFTDIIILDCTENMNNGNSYTYFSSLPHILQHNYDYVIKADDDVYLRLHPLSASLYPLPRQDLYYGFVIPCNTMNPLVEYMSGMGFLLSWFP RAYT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57500			Galactosyltransferase family p...		Lus10006531 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	6.4	0.8262
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	12.5	0.8058
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10008450 [exp]	16.0	0.6743
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	17.3	0.8033
					Lus10015488 [exp]	21.8	0.7967
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029816 [exp]	25.0	0.7821
					Lus10034352 [exp]	27.3	0.7975
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	29.4	0.7807
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	30.9	0.7811
AT1G28540			unknown protein		Lus10024553 [exp]	31.9	0.7794

Compare expression of checked genes

Lus10006531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.