Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56180 487 / 9e-173 unknown protein AT5G27290 100 / 3e-23 unknown protein AT2G21960 82 / 5e-17 unknown protein AT1G54680 61 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005779 [exp] 93 / 5e-21 AT2G21960 465 / 6e-166 unknown protein Lus10033822 [exp] 92 / 8e-21 AT5G27290 494 / 3e-177 unknown protein Lus10018966 [exp] 79 / 5e-16 AT5G27290 479 / 8e-171 unknown protein Lus10006822 [exp] 48 / 5e-06 AT2G21960 248 / 1e-81 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171400 [exp] 503 / 3e-179 AT1G56180 500 / 6e-178 unknown protein Potri.013G029000 [exp] 97 / 3e-22 AT5G27290 451 / 5e-160 unknown protein Potri.005G084400 [exp] 86 / 2e-18 AT2G21960 449 / 8e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006532 pacid=23140015 polypeptide=Lus10006532 locus=Lus10006532.g ID=Lus10006532.BGIv1.0 annot-version=v1.0 ATGGTAGCGATGGCACTTTCGCATCATTACCCTCCTCCTTTGCTCCCCAAAATTCAGACTCATGCTCTGTTTGTTTCCACACTCAGAGCCTCCTCCCGTG TCTCCGTCAAGTTTCTCCGCCGCGCTGTAGGAGAGTGGCAGGAATACGAGGAGGCTGTTAAGAGGAAGGACCTTGCCAGAGCCCTCAGGTTCTTGACAAC CTTGCAACCCAACACAACCACTGTCCCTTCCTCTTCTTCTTCCTCTTCCTCTCTTAGAAGATTGGGCGGTAGCCTGGATTCCATTGATGGATTGGAGAGG GATTGGGAGGTCCTCGATACTTGTATGAATGCAGACGATATGAGGCTCGTCGCCGCTGCTTATGACTTCCTCAAGTCAAGAGGCTTTCTCCCCAATTTCG GCAAGTTTAGAAGCATTGTATTGGATGGACCGAGAGAAATCACACCCACTGATTTGAAGTCTTCCACTGGACTAGAAGTGACTAAATTTGCTCCAAAGAA GTGGGGGATTTCTGGAGCCTCAAGCGTCGTGTCGTCAGCTTTTCTAGGGGGGACTTCTTTACTGCTTTGGAATGGAATCGATATCAGAACAAGCCTCACT GCTGTACTGGGTTTAGCTCTTCTTGATAACATATTCTTAGGTGGATCCTGCTTAGCTCAAATATCTAGCTATTGGCCTCCATACAGACGGCGGATTCTAG TTCACGAAGCAGGCCATCTTCTGGTAGCATACCTCATGGGTTGTCCGATTCGTGGCGTTATTCTAGATCCAATAGTTGCTGTGCAGATGGGCATCCAAGG ACAGGCAGGAACTCAGTTCTGGGATGAAAATATGAGCAATGAGCTTGCTGTAGGGCAGCTCAGCGGCGCTGCCTTTGACAGGTACTCTATGGTGCTTTTC GCCGGGATTGCAGCTGAAACTCTAGTGTACGGTGAGGCAGAGGGGGGAGAAAATGATGAGAATCTATTTAGGAGCATTTCGGTTCTTCTGGAACCCCCAC TATCTGTAGCTCAGATGTCGAATCAAGCTAGATGGTCAGTACTGCAGGCTTATAATCTGCTAAAATGGCACAAGGAAGCCCATAGAGCTGCCTTCAGGGC AATGGAAAGTGGGAGCAGTTTGAGTGTGGTGATTCGGAGAATCGAGGAGACCATAAATTACAGTAGCTGA
AA sequence Show only first row Show all	>Lus10006532 pacid=23140015 polypeptide=Lus10006532 locus=Lus10006532.g ID=Lus10006532.BGIv1.0 annot-version=v1.0 MVAMALSHHYPPPLLPKIQTHALFVSTLRASSRVSVKFLRRAVGEWQEYEEAVKRKDLARALRFLTTLQPNTTTVPSSSSSSSSLRRLGGSLDSIDGLER DWEVLDTCMNADDMRLVAAAYDFLKSRGFLPNFGKFRSIVLDGPREITPTDLKSSTGLEVTKFAPKKWGISGASSVVSSAFLGGTSLLLWNGIDIRTSLT AVLGLALLDNIFLGGSCLAQISSYWPPYRRRILVHEAGHLLVAYLMGCPIRGVILDPIVAVQMGIQGQAGTQFWDENMSNELAVGQLSGAAFDRYSMVLF AGIAAETLVYGEAEGGENDENLFRSISVLLEPPLSVAQMSNQARWSVLQAYNLLKWHKEAHRAAFRAMESGSSLSVVIRRIEETINYSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56180			unknown protein		Lus10006532 [exp]	0	1
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031710 [exp]	1.0	0.9479
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	2.0	0.9340
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	3.5	0.9312
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	4.5	0.9275
AT2G20725			CAAX amino terminal protease f...		Lus10018585 [exp]	4.6	0.8949
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	4.9	0.9261
AT1G69935		SHW1	short hypocotyl in white light...		Lus10030808 [exp]	5.2	0.8904
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	6.9	0.9304
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10034166 [exp]	8.5	0.8917
AT2G23390			unknown protein		Lus10038137 [exp]	9.5	0.9007

Compare expression of checked genes

Lus10006532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.