Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17450 101 / 1e-23 B-block binding subunit of TFIIIC (.1.2) AT1G59453 93 / 9e-21 B-block binding subunit of TFIIIC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000409 [exp] 216 / 1e-69 ND / Lus10000374 [exp] 182 / 8e-55 AT1G17450 334 / 2e-103 B-block binding subunit of TFIIIC (.1.2) Lus10037675 [exp] 144 / 4e-38 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2) Lus10015661 [exp] 114 / 8e-32 AT1G17450 598 / 0.0 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G064000 [exp] 144 / 4e-38 AT1G17450 1446 / 0.0 B-block binding subunit of TFIIIC (.1.2) Potri.001G170001 [exp] 0 / 1 AT1G17450 75 / 2e-16 B-block binding subunit of TFIIIC (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006533 pacid=23140012 polypeptide=Lus10006533 locus=Lus10006533.g ID=Lus10006533.BGIv1.0 annot-version=v1.0 ATGGACGACTTAATATCATCGGCTCTCAATGAAATCTGCTACCGAGGTTCTTCTGGCGTCTCACTTTCTTCCATCTGGGGCAAATTAAGCCCTGCTCCAT CTCCGACCGTGAGGGCCTCTCTGTGGAGCAACCTTCTTTCAGTTCCCGCCTTACAATTCAGCGTATCAGGCAAAGATCCGCCATTTGTCCCTGATGACCC GATAATCCAGCGCGTTGAGGATGCTGAGAAGCTGAAATTGAAGGTTGTAGCTAAGGAGCAACTGAGGGATTGCTTTGTTGGACTTTACGATATATTTCAA AAACTGAAGGATGCTGGTATAGTTGAGGAGTTCGATGCTAAAGTAAATGGCAAGATTTTTTCTAGAAGCAGGTATGTTCAAGACTTGGCCTTGATAAGAA AAAAACCTATGAGAGGTTTCATGATCTGGTCTCTAGGTTTGGGATGCATTGTCAGGCAGAAAACCACAAAAAAACTGCTGTATACAGGTATTGGACTTCT GCTAATTATAACCCGCAAAATTCTGCTGGACTGCCTGATTCAGCATTTCGTCCCGTCTGTATTGGTACTCCTGATCAAAGGTATGTTTGTAACTAAATTC TCTTCAATGAATAATCATTTGATTTCTGGAATTGACTGCACTGAGTCAAGAAATTTAAGTGGTGGGCGAGAAGATACAGAATCTTCTATGTTTCTCAAAG ATGGTAAAGCAAACTCTGGCCAGGTGCCAGCCATTGACCATGTATCAAGTGGAGCAGCATCTGGTGCTGCACTTGATTTGGTTTGTGTAGATGTTGAATC AAATGGTGCTTCATCAGAAACATCCCAGATTAGTTTGTTGAAGCAACCATCTGTGCATCAAACACCTTTAACTACTGATAATTCACTGCGGGAGCAAAGA ATAATTGAGCACATACAGGTTTGTCCATATTTGATCAAATGA
AA sequence Show only first row Show all	>Lus10006533 pacid=23140012 polypeptide=Lus10006533 locus=Lus10006533.g ID=Lus10006533.BGIv1.0 annot-version=v1.0 MDDLISSALNEICYRGSSGVSLSSIWGKLSPAPSPTVRASLWSNLLSVPALQFSVSGKDPPFVPDDPIIQRVEDAEKLKLKVVAKEQLRDCFVGLYDIFQ KLKDAGIVEEFDAKVNGKIFSRSRYVQDLALIRKKPMRGFMIWSLGLGCIVRQKTTKKLLYTGIGLLLIITRKILLDCLIQHFVPSVLVLLIKGMFVTKF SSMNNHLISGIDCTESRNLSGGREDTESSMFLKDGKANSGQVPAIDHVSSGAASGAALDLVCVDVESNGASSETSQISLLKQPSVHQTPLTTDNSLREQR IIEHIQVCPYLIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	0	1
					Lus10027142 [exp]	1.4	0.8808
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	3.0	0.8619
AT3G56830			Protein of unknown function (D...		Lus10030290 [exp]	4.9	0.8490
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	6.0	0.8329
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	9.8	0.8132
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	10.2	0.8654
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	10.4	0.8509
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	13.0	0.8573
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	17.5	0.8561
AT1G12930			ARM repeat superfamily protein...		Lus10041503 [exp]	18.7	0.8090

Compare expression of checked genes

Lus10006533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.