Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 241 / 7e-78 Peroxidase superfamily protein (.1) AT5G06730 209 / 9e-65 Peroxidase superfamily protein (.1) AT5G06720 204 / 2e-63 ATPA2 peroxidase 2 (.1) AT5G58400 203 / 6e-63 Peroxidase superfamily protein (.1) AT5G58390 200 / 7e-62 Peroxidase superfamily protein (.1) AT1G49570 199 / 6e-61 Peroxidase superfamily protein (.1) AT4G16270 197 / 4e-60 Peroxidase superfamily protein (.1) AT1G44970 196 / 5e-60 Peroxidase superfamily protein (.1) AT3G32980 193 / 9e-59 Peroxidase superfamily protein (.1) AT5G66390 192 / 1e-58 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006534 [exp] 350 / 2e-120 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 352 / 7e-120 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10032786 [exp] 259 / 1e-84 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 258 / 2e-84 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10034207 [exp] 235 / 3e-75 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10025255 [exp] 218 / 2e-68 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10009936 [exp] 214 / 2e-67 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10004163 [exp] 208 / 8e-65 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10009934 [exp] 206 / 1e-64 AT5G05340 372 / 5e-130 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143200 [exp] 274 / 9e-91 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 250 / 3e-81 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 226 / 5e-72 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 225 / 2e-71 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 216 / 5e-68 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 211 / 3e-66 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 211 / 4e-66 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 209 / 2e-65 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 206 / 1e-63 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 203 / 6e-63 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10006535 pacid=23149169 polypeptide=Lus10006535 locus=Lus10006535.g ID=Lus10006535.BGIv1.0 annot-version=v1.0 ATGGCTTATTCCTTTGCTAAGTCCTCGTTCGTAACCCTCTTCATAATCGTATCGGTGCTGGCTGCAACCAGTAACGCCCAACTGGCTGGGAACTTCTACG CTCGAACATGCCCTAACGTTCAAGGCATCGTTCGGGGTGCGATGAGGGAAGCTGTTAATAGAGAGCCCCGCCTCGGTGCTTCTATCCTTCGCTTGTTCTT CCACGACTGTTTCGTCAATGGATGCGACGGGTCTATTTTGCTCGATGACACGTCAACATTTACGGGGGAGAAGAACGCAATTCCGAATCGGAACTCAGCT AGAGGGTTTGAAGTGATAGACACCATCAAAACTAGGGTTGAAAGAGCCTGCAGTGCCACCGTCTCTTGTGCTGACATCCTTGCAATTGCCGCAAGAGACG GTGTCGTATTGCTTGGTGGGCCATCGTGGCAAGTCCTACTGGGCCGGAGGGACGCAAGAACAGCCAGCCAAAGCGACGCCAACAATGATCTCCCCTCCCC ATTCTCCGACCTCCCAGCCCTAATCTCTTCATTCACCAATAAGGGCCTAACCGCCGCCGACATGACCGTCCTGTCCGGCTGCCCCATTCGACAATGCTTA TTACAGGGAGCTTGTGGGCCAGCGTGGGCTACTGCACTCCGACCAGCAGCTGTTCAGCGGTGGGTCCCAAGATGCTTTGATGACTTCTCCTTCAATGGAC TCAACGTCCCGAGAACCATATCCTCCAACAAAGTGGGTTCGAACGTCACTCTTCTCAGTGTCGACAAGATTCCAGGTCTCAACACCTTGGAAATTTCTTT AGCTCGTCTCGACTATGGTCCCAATAGAAGACTCAACCCACCCAACACCCATCCTCGTGGCATCGAGATTTTGGTTGTCATTAAGGACAAACTCTACGTC GGGTTTGTTACTTCCAGCCCAAATAATCGTCTCATCAGCAAGATACTTTACCTCGATGACGTGTTTGTTTTCCCAGTTGAACTCGTCCATTTCCAGCTCA ATATCGATAGAGCTCCGGCTGGGACATTTGCGGATTGA
AA sequence Show only first row Show all	>Lus10006535 pacid=23149169 polypeptide=Lus10006535 locus=Lus10006535.g ID=Lus10006535.BGIv1.0 annot-version=v1.0 MAYSFAKSSFVTLFIIVSVLAATSNAQLAGNFYARTCPNVQGIVRGAMREAVNREPRLGASILRLFFHDCFVNGCDGSILLDDTSTFTGEKNAIPNRNSA RGFEVIDTIKTRVERACSATVSCADILAIAARDGVVLLGGPSWQVLLGRRDARTASQSDANNDLPSPFSDLPALISSFTNKGLTAADMTVLSGCPIRQCL LQGACGPAWATALRPAAVQRWVPRCFDDFSFNGLNVPRTISSNKVGSNVTLLSVDKIPGLNTLEISLARLDYGPNRRLNPPNTHPRGIEILVVIKDKLYV GFVTSSPNNRLISKILYLDDVFVFPVELVHFQLNIDRAPAGTFAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10006535 [exp]	0	1
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	12.2	0.8803
AT4G24730			Calcineurin-like metallo-phosp...		Lus10017960 [exp]	22.3	0.8645
AT5G05340			Peroxidase superfamily protein...		Lus10000625 [exp]	22.4	0.8216
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	26.1	0.8342
AT5G49040			Disease resistance-responsive ...		Lus10021082 [exp]	26.4	0.8722
AT3G07425			unknown protein		Lus10009587 [exp]	44.0	0.8617
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10006951 [exp]	45.9	0.8510
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	52.6	0.8561
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040733 [exp]	53.2	0.8359
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	58.2	0.8553

Compare expression of checked genes

Lus10006535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.