Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) AT5G39180 308 / 3e-107 RmlC-like cupins superfamily protein (.1) AT5G39130 308 / 3e-107 RmlC-like cupins superfamily protein (.1) AT5G39110 306 / 1e-106 RmlC-like cupins superfamily protein (.1) AT5G39190 306 / 1e-106 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39120 305 / 3e-106 RmlC-like cupins superfamily protein (.1) AT5G39160 305 / 5e-106 RmlC-like cupins superfamily protein (.1.2.3) AT3G05950 296 / 2e-102 RmlC-like cupins superfamily protein (.1) AT5G38940 271 / 1e-92 RmlC-like cupins superfamily protein (.1) AT5G38910 267 / 4e-91 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006538 [exp] 424 / 6e-153 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10000622 [exp] 411 / 9e-148 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 401 / 4e-144 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 395 / 1e-141 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10003114 [exp] 395 / 1e-141 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10033767 [exp] 391 / 4e-140 AT5G39150 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Lus10003267 [exp] 267 / 4e-91 AT5G39130 257 / 4e-87 RmlC-like cupins superfamily protein (.1) Lus10021980 [exp] 265 / 5e-90 AT5G39160 249 / 5e-84 RmlC-like cupins superfamily protein (.1.2.3) Lus10042517 [exp] 264 / 1e-89 AT5G39160 251 / 4e-85 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026200 [exp] 343 / 6e-121 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 338 / 5e-119 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 338 / 5e-119 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 336 / 2e-118 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 336 / 2e-118 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 336 / 2e-118 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 333 / 3e-117 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.013G052000 [exp] 305 / 4e-106 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.013G052100 [exp] 303 / 2e-105 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1) Potri.013G052300 [exp] 298 / 2e-103 AT5G39110 281 / 2e-96 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10006536 pacid=23149207 polypeptide=Lus10006536 locus=Lus10006536.g ID=Lus10006536.BGIv1.0 annot-version=v1.0 ATGATGATGAAAGGGTCTCACTTTCTGGGAGCAGTTGGGTGCCTCTTGGCGCTGTCTTCATTGATGTGCTTCACCACTGCCTACGATCCAAGCCCTCTCC AGGACTTCTGCGTTGCCATTGATGATCTGAAGGATGGAGTATTTGTGAACGGCAAGTTCTGCAAGGATTCCATGCAGGCTAAAGCAGATGATTTCTCCTT CAAAGGACTCAACGTCTCCCGAAACACATCCAACCAAGTTGGATCGAACGTCACTCTTTTGAACGTTGATCAGATTCCGGGTCTCAACACCTTAGGAATC TCATTGGCTCGGCTCGACTACGCTCCCAACGGAGGGCTCAATCCACCCCACACCCACCCTCGTGGTACTGAGATTCTGGTTGTCATTCAAGGGACGCTAT ATGTCGGGTTCGTTACCTCCAACCCGGATAATCGCCTCATCAGCAAGGTGCTTTACCCTGGTGATGTTTTCGTTTTCCCAATCGGTCTCATCCATTTCCA ACTCAACATCGCAAAGACTCCTGCCGTGGCATTTGCTGGATTGAGCAGCCAAAATCCAGGTGTCATCACCATAGCTAATGCAGTGTTCGGATCAAACGCA CCAATCAACCCTGACGTATTGACCAAGGCATTCCAGCTAGACAAGGATGTCGTGGCCGATCTACAGAATAAGTTTGCCAAAAATTAA
AA sequence Show only first row Show all	>Lus10006536 pacid=23149207 polypeptide=Lus10006536 locus=Lus10006536.g ID=Lus10006536.BGIv1.0 annot-version=v1.0 MMMKGSHFLGAVGCLLALSSLMCFTTAYDPSPLQDFCVAIDDLKDGVFVNGKFCKDSMQAKADDFSFKGLNVSRNTSNQVGSNVTLLNVDQIPGLNTLGI SLARLDYAPNGGLNPPHTHPRGTEILVVIQGTLYVGFVTSNPDNRLISKVLYPGDVFVFPIGLIHFQLNIAKTPAVAFAGLSSQNPGVITIANAVFGSNA PINPDVLTKAFQLDKDVVADLQNKFAKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	0	1
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	1.0	0.9972
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	1.4	0.9926
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	3.5	0.9872
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	5.5	0.9882
AT2G45220			Plant invertase/pectin methyle...		Lus10038917 [exp]	5.9	0.9836
AT3G19615			unknown protein		Lus10031599 [exp]	6.0	0.9818
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	7.4	0.9855
AT1G17860			Kunitz family trypsin and prot...		Lus10013732 [exp]	7.6	0.9738
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	8.5	0.9846
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	8.5	0.9829

Compare expression of checked genes

Lus10006536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.