Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006539 [exp] 303 / 9e-107 ND / Lus10000623 [exp] 125 / 1e-37 ND / Lus10035524 [exp] 101 / 6e-27 ND / Lus10016944 [exp] 94 / 6e-24 ND / Lus10001546 [exp] 76 / 6e-17 ND / Lus10027774 [exp] 72 / 4e-16 ND / Lus10039442 [exp] 50 / 3e-07 ND / Lus10039441 [exp] 49 / 6e-07 ND / Lus10039474 [exp] 47 / 4e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006537 pacid=23149184 polypeptide=Lus10006537 locus=Lus10006537.g ID=Lus10006537.BGIv1.0 annot-version=v1.0 ATGGAGCCGCCGGAGTTGCTAAGCCTGGAGTCCGACATACATTTCGTCCAAGCTAATTCCAATGGTAACGGCGTTAGTGTCTACGAGTACAAGGAGTATA CCAACATTTTCGGCATGATTCATGCTAACTGTCCTCGTTGGACTCTGTTGGCAAAAGTAACACGTGCTTCTCCTAGATTTTCTGGTCTGAACGTATTCGG TGTAACGTTTTTGGCCGAGGGTTTGGATACTTTAGCTCGTGATTTGACCATCACTACCGAAGATGGCGAGAAGTATCATCTTGCAGTAAACCGCCAAGGC GTTTGCTTCCTGTGTCTAAGTGAAAATGATCCGATACGGTGGCTGAGAATCAGTGGCCTTTTCTGTTGGTCTAAGTACGGAGTGGCTAAACCTGATCATC AAGTGCGTGAAGCAGAAGCAAGCATGAAAGGTCCTCTGGCTATTATCGACGTGACTTCCGCGGAAATAATAAAGGAGAAGAAGATGAAGATAGAGCAAAT GGAGAAGGATCTGGCTTCCCTCAAGGCAACCTTGAAAGGCTTACCTAGCATCTAA
AA sequence Show only first row Show all	>Lus10006537 pacid=23149184 polypeptide=Lus10006537 locus=Lus10006537.g ID=Lus10006537.BGIv1.0 annot-version=v1.0 MEPPELLSLESDIHFVQANSNGNGVSVYEYKEYTNIFGMIHANCPRWTLLAKVTRASPRFSGLNVFGVTFLAEGLDTLARDLTITTEDGEKYHLAVNRQG VCFLCLSENDPIRWLRISGLFCWSKYGVAKPDHQVREAEASMKGPLAIIDVTSAEIIKEKKMKIEQMEKDLASLKATLKGLPSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006537 [exp]	0	1
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009408 [exp]	4.0	0.7330
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10001225 [exp]	6.6	0.6629
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10020170 [exp]	12.9	0.6740
AT1G17750		AtPEPR2	PEP1 receptor 2 (.1)		Lus10032945 [exp]	23.4	0.6372
AT5G01260			Carbohydrate-binding-like fold...		Lus10018226 [exp]	23.6	0.6041
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	24.6	0.6684
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	28.9	0.6396
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	34.4	0.6361
					Lus10002240 [exp]	36.8	0.5999
AT5G12320			ankyrin repeat family protein ...		Lus10036033 [exp]	37.3	0.6542

Compare expression of checked genes

Lus10006537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.