Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) AT5G39130 311 / 1e-108 RmlC-like cupins superfamily protein (.1) AT5G39150 310 / 5e-108 RmlC-like cupins superfamily protein (.1) AT5G39180 310 / 6e-108 RmlC-like cupins superfamily protein (.1) AT5G39190 308 / 2e-107 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 307 / 6e-107 RmlC-like cupins superfamily protein (.1.2.3) AT5G39110 305 / 4e-106 RmlC-like cupins superfamily protein (.1) AT3G05950 298 / 4e-103 RmlC-like cupins superfamily protein (.1) AT5G38940 274 / 8e-94 RmlC-like cupins superfamily protein (.1) AT4G14630 270 / 2e-92 GLP9 germin-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000622 [exp] 432 / 5e-156 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10006536 [exp] 424 / 6e-153 AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 404 / 6e-145 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 394 / 3e-141 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10003114 [exp] 394 / 3e-141 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10033767 [exp] 390 / 1e-139 AT5G39150 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Lus10021980 [exp] 273 / 2e-93 AT5G39160 249 / 5e-84 RmlC-like cupins superfamily protein (.1.2.3) Lus10003267 [exp] 273 / 3e-93 AT5G39130 257 / 4e-87 RmlC-like cupins superfamily protein (.1) Lus10042517 [exp] 271 / 2e-92 AT5G39160 251 / 4e-85 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026200 [exp] 355 / 5e-126 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 349 / 2e-123 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 349 / 2e-123 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 347 / 8e-123 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 347 / 8e-123 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 347 / 8e-123 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 344 / 1e-121 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.013G052100 [exp] 304 / 1e-105 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1) Potri.013G052000 [exp] 304 / 1e-105 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.013G051700 [exp] 301 / 9e-105 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10006538 pacid=23149212 polypeptide=Lus10006538 locus=Lus10006538.g ID=Lus10006538.BGIv1.0 annot-version=v1.0 ATGATGATGAAAGGCTCTTACTTCCTTGTAGCAGTTGGCTTCCTCTCAGTGTTGTCTTCATTTTGCTTCACCACTGCTTATGATCCAAGCCCTCTCCAAG ATTTCTGCGTCGCCATTGATGATCCTAAGAACGGAGTATTCGTGAACGGCAAGTTCTGCAAGGATCCCATGCAGGCCAAAGCAGATGACTTCTCTTTCAA AGGACTCAACGTCCCCCGAAACACATCCAACCAAGTTGGTTCGAACGTCACTCTTCTGAACGTTGACCAGATTCCGGGTCTCAACACCCTAGGAATCTCA TTGGCTCGGCTCGACTACGCTCCTAACGGAGGGCTCAACCCACCGCACACCCACCCTCGTGGTACTGAGATTCTGGTTGTCATTCAAGGGACGCTATATG TCGGGTTCGTTACCTCCAACCCGGATAATCGCCTCATCAGCAAGGTGCTTTACCCAGGTGATGTTTTCGTTTTCCCAATCGGTCTCATCCATTTCCAACT CAACATCGCAAAGACTCCTGCCGTAGCGTTTGCCGGATTGAGCAGTCAGAATCCAGGTGTCATCACAATAGCCAATGCAGTTTTCGGCTCAAACGCACCG GTCAACCCCGATGTGTTGACCAAGGCATTCCAGCTGGATAAGAATGTCGTGGCCGATCTACAGAAGAAGTTTGCCAAAAATTAA
AA sequence Show only first row Show all	>Lus10006538 pacid=23149212 polypeptide=Lus10006538 locus=Lus10006538.g ID=Lus10006538.BGIv1.0 annot-version=v1.0 MMMKGSYFLVAVGFLSVLSSFCFTTAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPMQAKADDFSFKGLNVPRNTSNQVGSNVTLLNVDQIPGLNTLGIS LARLDYAPNGGLNPPHTHPRGTEILVVIQGTLYVGFVTSNPDNRLISKVLYPGDVFVFPIGLIHFQLNIAKTPAVAFAGLSSQNPGVITIANAVFGSNAP VNPDVLTKAFQLDKNVVADLQKKFAKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	0	1
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	1.0	0.9972
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	4.0	0.9851
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	4.2	0.9829
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	5.0	0.9850
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	5.5	0.9802
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	6.2	0.9861
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	6.5	0.9851
AT2G45220			Plant invertase/pectin methyle...		Lus10038917 [exp]	6.5	0.9815
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	9.5	0.9808
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021028 [exp]	11.3	0.9731

Compare expression of checked genes

Lus10006538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.