Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006537 [exp] 337 / 5e-120 ND / Lus10000623 [exp] 129 / 5e-39 ND / Lus10035524 [exp] 113 / 2e-31 ND / Lus10016944 [exp] 107 / 2e-29 ND / Lus10001546 [exp] 79 / 2e-18 ND / Lus10027774 [exp] 67 / 4e-14 ND / Lus10039441 [exp] 49 / 4e-07 ND / Lus10039442 [exp] 49 / 4e-07 ND / Lus10004305 [exp] 49 / 5e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006539 pacid=23149175 polypeptide=Lus10006539 locus=Lus10006539.g ID=Lus10006539.BGIv1.0 annot-version=v1.0 ATGGCGCAGGAGTTGGTAAGCCTGGAGTCCGACATACATTTCGTCCAAGCTAATTCCAATGGTAACGGCGTTAGTGTCTACGAGTACAAGGAGTATACCA ACATTTTCGGCATGATTCATGCTAACTGTCCTCGTTGGACTCTGTTGGCAGAGGTAACAGGTGCTTCTCCTGGATTTTCGGGTCTGAACGTATTCGGTGT AACGTTTTTGGCCGAGGGTTTGGATACTCTAGCTCGTGATTTGACCATCACTAGCGAAAATGGCGATAAGTTTCGTCTTGTAGTCAACCGCCAAGGCCTT TGCTTCGTGTGTCTAAGTCAAAATGATCCAATAAAGTGGCTGAGAATCAGTGGCCTTTTCTGTTGGTCGAAGTATGGGGTGGCTAAACCTGATCTTCAAG TGCGTGAAGCAGAAGCAAGCAATGGCGCCGTTTTGAAAGGTCCTCTGGCTATTATCGACGTGAATTCCGCGGAAATAGTAAGGGAGAAGAAGATGAAGAT AGAGCAAATGGAGAAGGATCTGGCTTCCCTCAAGGCTACCTTGAAAGGCTTACCTAGCATCTAA
AA sequence Show only first row Show all	>Lus10006539 pacid=23149175 polypeptide=Lus10006539 locus=Lus10006539.g ID=Lus10006539.BGIv1.0 annot-version=v1.0 MAQELVSLESDIHFVQANSNGNGVSVYEYKEYTNIFGMIHANCPRWTLLAEVTGASPGFSGLNVFGVTFLAEGLDTLARDLTITSENGDKFRLVVNRQGL CFVCLSQNDPIKWLRISGLFCWSKYGVAKPDLQVREAEASNGAVLKGPLAIIDVNSAEIVREKKMKIEQMEKDLASLKATLKGLPSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006539 [exp]	0	1
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	4.6	0.9398
					Lus10011267 [exp]	6.3	0.9334
AT5G49710			unknown protein		Lus10000765 [exp]	6.8	0.9493
AT4G17960			unknown protein		Lus10000314 [exp]	7.2	0.9386
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	12.7	0.9411
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	13.4	0.9284
AT2G01100			unknown protein		Lus10015331 [exp]	14.5	0.9270
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10001514 [exp]	14.8	0.8777
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	15.3	0.9227
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	15.7	0.9279

Compare expression of checked genes

Lus10006539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.