Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 391 / 2e-136 SAG12 senescence-associated gene 12 (.1) AT5G50260 371 / 2e-128 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 374 / 4e-128 Granulin repeat cysteine protease family protein (.1) AT3G48340 369 / 3e-127 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G43060 356 / 7e-121 Granulin repeat cysteine protease family protein (.1) AT3G19400 349 / 1e-119 Cysteine proteinases superfamily protein (.1.2) AT4G35350 349 / 1e-119 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G49340 348 / 1e-119 Cysteine proteinases superfamily protein (.1) AT1G20850 347 / 1e-118 XCP2 xylem cysteine peptidase 2 (.1) AT1G47128 348 / 1e-117 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003275 [exp] 680 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 663 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10026362 [exp] 662 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10020722 [exp] 660 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 659 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10009145 [exp] 659 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10020723 [exp] 659 / 0 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10020730 [exp] 658 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10028502 [exp] 658 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 546 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 545 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 543 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 540 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 540 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 538 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 498 / 1e-178 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 479 / 7e-172 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 480 / 2e-171 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 476 / 1e-170 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10006542 pacid=23149209 polypeptide=Lus10006542 locus=Lus10006542.g ID=Lus10006542.BGIv1.0 annot-version=v1.0 ATGGCAACCTTAAACAGCAAATTCTTTCTCTTGGCTTCCATTTTCATTATAGGAGCCTTGGCTTCTCACGCCACGGCACGCTACACGCTTCCTGAAGCAG CCATACGTCTGAGGCATGAGCAGTGGATGACTCGTTACAGACGAGTCTACAACAGTCCCACAGAAAAGGAGACTCGCTTCCTCATTTTCAAAGACAATGT AGCATTTATCGACTCTTCCAATGCCGCGGGAAACAAGTCTTACAAGCTGGGAGTCAACCAGTTTGCGGACTTGACTAACGAGGAGTTCAAATCCACTAGG AACGGGTTCAAGGGACACATGTGTTCTCCACAACATGGAACTTTCCGGTATGAAAATGTGAGCGCGGTTCCAACGACCATGGACTGGAGGAAGAAGGGAG CAGTCACTCCCATCAAAGACCAAGGTCAGTGCGGAAGCTGTTGGGCGTTCTCCGCAGTGGGAGCAATGGAAGGAATCCATCAGTTAAGTACTGGGAAATT GGTGTCCCTTTCGGAGCAAGAATTGGTCGATTGTGACACCAAGGGAGAGGACCAAGGATGCAACGGTGGGTTGATGGATGATGCGTTTAAGTTCATCATT CAAAACAAGGGCTTGACCACCGAGACCAACTACCCTTACGACGCTGCTGATGGAACGTGTAATGCTAACAAAGAAGGAAGTAGCGCGGCCAAGATTACAG GATACGAAGACGTGCCAGCCAACAACGAGGCATCGCTGATGAAGGCGGTTGCGAATCAGCCAATTTCCGTTGCGATTGATGCAGGGGATTCGTCGTTTCA ATTCTACTCGAGTGGGATCTTCACCGGAGAATGTGGAACCGAACTAGACCATGGAGTGACGGCAGTTGGGTATGGAGAGAGCGGCGGGATGAAGTACTGG TTGGTGAAGAACTCATGGGGAGCACAGTGGGGAGAAGCCGGATACATCCGAATGCAGAGAGATGTTACCGCTAAAGAAGGTCTCTGCGGCATAGCAATGC AGGCTTCATATCCTACTGCTTGA
AA sequence Show only first row Show all	>Lus10006542 pacid=23149209 polypeptide=Lus10006542 locus=Lus10006542.g ID=Lus10006542.BGIv1.0 annot-version=v1.0 MATLNSKFFLLASIFIIGALASHATARYTLPEAAIRLRHEQWMTRYRRVYNSPTEKETRFLIFKDNVAFIDSSNAAGNKSYKLGVNQFADLTNEEFKSTR NGFKGHMCSPQHGTFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCNGGLMDDAFKFII QNKGLTTETNYPYDAADGTCNANKEGSSAAKITGYEDVPANNEASLMKAVANQPISVAIDAGDSSFQFYSSGIFTGECGTELDHGVTAVGYGESGGMKYW LVKNSWGAQWGEAGYIRMQRDVTAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10006542 [exp]	0	1
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	9.5	0.8744
AT5G19970			unknown protein		Lus10019451 [exp]	11.0	0.8804
					Lus10003852 [exp]	13.0	0.8569
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	21.4	0.8545
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	29.7	0.8447
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	31.8	0.8364
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	32.6	0.8281
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008910 [exp]	37.8	0.7858
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	38.4	0.8356
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	38.9	0.8470

Compare expression of checked genes

Lus10006542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.