Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42960 206 / 9e-58 Protein kinase superfamily protein (.1) AT3G59110 206 / 9e-58 Protein kinase superfamily protein (.1) AT1G09440 199 / 1e-55 Protein kinase superfamily protein (.1) AT1G56720 199 / 2e-55 Protein kinase superfamily protein (.1.2.3) AT4G02630 198 / 4e-55 Protein kinase superfamily protein (.1) AT3G24540 197 / 1e-54 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G01540 195 / 2e-54 Protein kinase superfamily protein (.1.2) AT5G18500 195 / 4e-54 Protein kinase superfamily protein (.1.2) AT3G24550 199 / 5e-54 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G20650 191 / 7e-54 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003274 [exp] 1149 / 0 AT1G70530 205 / 4e-59 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10003273 [exp] 327 / 4e-106 ND 42 / 8e-05 Lus10030863 [exp] 225 / 5e-64 AT1G09440 163 / 2e-42 Protein kinase superfamily protein (.1) Lus10038810 [exp] 202 / 2e-59 AT5G12360 43 / 5e-05 unknown protein Lus10039048 [exp] 197 / 2e-57 AT5G12360 42 / 1e-04 unknown protein Lus10019933 [exp] 196 / 9e-56 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10006215 [exp] 198 / 1e-55 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028549 [exp] 195 / 2e-55 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10010703 [exp] 193 / 1e-54 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030600 [exp] 719 / 0 AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) Potri.013G053001 [exp] 717 / 0 AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) Potri.018G107901 [exp] 215 / 9e-61 AT1G51830 164 / 2e-43 Leucine-rich repeat protein kinase family protein (.1) Potri.008G145900 [exp] 203 / 3e-58 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G095900 [exp] 201 / 2e-57 AT1G24030 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 202 / 2e-56 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 198 / 3e-56 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 200 / 1e-55 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G059000 [exp] 198 / 4e-55 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 196 / 2e-54 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006544 pacid=23149176 polypeptide=Lus10006544 locus=Lus10006544.g ID=Lus10006544.BGIv1.0 annot-version=v1.0 ATGGCGTCAATAGTCCGTCAGGACCGTAATCTTGAAAACGTTTGGGGGAAGCCCGATGCCTCCAAATCATCGAAGAAGGGTTTAGGGTTAGGTGGAAGGA AACCACTGGGGGATTTGTCCAACGCTGTAAAGACTCATTCGTCTTCTGCTTCTCTGAACCAAACCTCCAAGAAGGCTGCTGTTAGTGTTGGGGGTAAAGC TTCTAAGAATCGCGAAGTTCTTTTTGACATCTCGAATTCGGCCAAGTTACAGAAGGAGACGTCTAAGAAGACTGTGGTTAAGGAATGTCTGAGTGTTGTG TGTGAGGAGCAGCAGCCACTGGCTCGAGAGTGTGGGATTGCCGGAGAAGGGTTCTTGCACAATCATGATGAGTGCATCAAAGCTCAGACTCGAGCGATGG ATGTGGATGAGTTGATGAAGATTATTTCAATGGAGAATGATTGTTCTATGCTGTTCGGATCTCCAAGGGTAATTGGGACGCCTACCCGTTTCGAGCCTGA GAGTCCTGAGAGCAACTACAAGCTGTTAATCGAAGAAGGAAGCAAGGACTTCGAACTTTCTCCGGTTGGAAGACTCGATTCTTCGCCTAGCTGGAGTCCA CCATCGTCGCCCGAGTTAGATATTAGCTGGATGGATAGTGGCAGCGACGACATTTTCAACTTCAAGCTGATTGACTCTCCCTATGCTGTTGGAGTCTTGA GAATGAAGGGCACGTCCCCTTATAAGGTCGCTTGGCAGAAAGTCAGCTTCTTTTTCATAGCAGCCTTCTTCAGCCATGCGTCAGGCGAATGTGTATTGGA CTTCAACGACGAGTTCCCTTACCAACCAACAGGCGAATGCATCGGTACAAATAAGCAGTTGGAACTGAGGGAATTGAATTCCATCAGTACAACTTTGTGC TGTAGAAATGTCCTTAATGTCATAACTAAGAATCTTGCTCTGAGAGTGAGCCAAACCCATGGTGCACTATTTCTTCCACAGTATCAATGGAAGGACTGTT CGGGGCCGTTCCCTCAGCAGAAATCTGTGTCTCCTCTCTCTTGTGGGTTTGATGTGCTTTACAGTGGGAGTGGCCCTTGTTCGAGCTTGTCCATGGCAGC GATGGAGCAGGAGGCAGGGTTCAGAGCTACCGTGAACTCTTGCTCGAACCTCAATGCTTCTTCATCGTTCGATGATGCTTGCACTGGTTGTGTTGTGGCA ATTGGGTCTTTGATCAGACATTTGTTGTCGAACTCTTACGTCAGCAGTGATGACACCACTCAAGTGATGATATGCACAGTATCTGTTATGGTTGCGATTG CTGGAGAGAAATTGGAGCAGGGGGATTCTGTTGATGATCTTTATAGGTGCTTGCCTGCCATGGAGGATTTTGGTGACTCAAATGATGGCTACATAAGAAT CAAAAATTCTGTGGCCAAAGAGGTAGGTTCAGTGGTGATAGCAGTTGTGACACTGATCCTGGTCCTCATTCTGGTGAAGTTTGTGAGAAGGAACATGGAC AAAGGCAAGAGGAAATCCGGGAAGCCACTTCTTGAAACTGAAGAAGTCGCAGCATGGTCAGGACTCTACAGATTCTCCAAGAACGAGATCCAGAACGCCA TGAACTACAGCAGTGAGAAGACTTGCCTTGGGAGAGGAAGTGCTGGCCAAGTGTATAGAGGAGTTTTGCCCAGTGGACAAGTTGTTGCCATTAAGCATAT CCATCAGGGACATACCTCTGATTCTTTCACCAGAGAAGTTGAAGGCCTTTCCAGGATTAGGCATCCGAATCTCGTCTGCCTCTTTGGTTGTTGCATCCAT GGCTCCGATCGATACCTTGTCTATGAGTTCTGCTCTGCTGGAAACTTGGCTCAACATCTACTTAGAAAAGAATCTACACTTACTTGGGAAAGAAGAGTCA AGATCCTGAAAGGCTGTGCCCTTGGTCTCAGATACCTCCACCATTACATCGACGGTTGCATTGTTCATCGAGACATCAAGCTTACAAATATACTCTTGAC GGAGGAGTTGGAGCCGAAGCTATCGGATTTCGGGCTAGCAAAGATGATTGGAATGGAAGAAAGCAAAGTTTTCACAGAAGTAAGAGGAACCATAGGCTAC ATGGATCCGGAATACATGAGTAACGCCAAGTTGACATGTGCAAGTGATATATACAGCTTTGGGATAGTGATTCTTCAAATCTTGTCAGGCAAAAAAGTCA TTGAGTTGGATCTTGATGCCAGAGACCAGCTCACCAGAAAGGCAAAGGATGTAAGTCTCGGGAAGCGGCCACTTGAAGATTTTGAGGATCCAAGGCTGAA TGGGGAACTGAACAGGGAAGACTTCGAAGTCATCCTGCAGATTGCGGTCCTGTGTGTTGCAAAATCTAGCAAAGGGCGCCCGACGATTGATGTTGTGTGG GAAGTTTTGGAGAAGGCCTGGAAGAACACAGTTTCTCAAAAGAAAACAAGGTCAGAAGTTAGTTCACCTGGAGCCTCATATTCCCATTCCATAGATGTAG TTCCTGCCTGA
AA sequence Show only first row Show all	>Lus10006544 pacid=23149176 polypeptide=Lus10006544 locus=Lus10006544.g ID=Lus10006544.BGIv1.0 annot-version=v1.0 MASIVRQDRNLENVWGKPDASKSSKKGLGLGGRKPLGDLSNAVKTHSSSASLNQTSKKAAVSVGGKASKNREVLFDISNSAKLQKETSKKTVVKECLSVV CEEQQPLARECGIAGEGFLHNHDECIKAQTRAMDVDELMKIISMENDCSMLFGSPRVIGTPTRFEPESPESNYKLLIEEGSKDFELSPVGRLDSSPSWSP PSSPELDISWMDSGSDDIFNFKLIDSPYAVGVLRMKGTSPYKVAWQKVSFFFIAAFFSHASGECVLDFNDEFPYQPTGECIGTNKQLELRELNSISTTLC CRNVLNVITKNLALRVSQTHGALFLPQYQWKDCSGPFPQQKSVSPLSCGFDVLYSGSGPCSSLSMAAMEQEAGFRATVNSCSNLNASSSFDDACTGCVVA IGSLIRHLLSNSYVSSDDTTQVMICTVSVMVAIAGEKLEQGDSVDDLYRCLPAMEDFGDSNDGYIRIKNSVAKEVGSVVIAVVTLILVLILVKFVRRNMD KGKRKSGKPLLETEEVAAWSGLYRFSKNEIQNAMNYSSEKTCLGRGSAGQVYRGVLPSGQVVAIKHIHQGHTSDSFTREVEGLSRIRHPNLVCLFGCCIH GSDRYLVYEFCSAGNLAQHLLRKESTLTWERRVKILKGCALGLRYLHHYIDGCIVHRDIKLTNILLTEELEPKLSDFGLAKMIGMEESKVFTEVRGTIGY MDPEYMSNAKLTCASDIYSFGIVILQILSGKKVIELDLDARDQLTRKAKDVSLGKRPLEDFEDPRLNGELNREDFEVILQIAVLCVAKSSKGRPTIDVVW EVLEKAWKNTVSQKKTRSEVSSPGASYSHSIDVVPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59110			Protein kinase superfamily pro...		Lus10006544 [exp]	0	1
AT3G48210			unknown protein		Lus10042089 [exp]	1.4	0.8827
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	2.8	0.8766
					Lus10011118 [exp]	3.2	0.8615
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	4.0	0.8739
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	4.9	0.8752
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	8.1	0.8437
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	13.6	0.8594
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	14.1	0.8447
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	14.3	0.8370
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	15.2	0.8563

Compare expression of checked genes

Lus10006544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.