Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64250 259 / 1e-86 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003271 [exp] 342 / 9e-119 AT5G64250 479 / 3e-171 Aldolase-type TIM barrel family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G051800 [exp] 266 / 4e-89 AT5G64250 510 / 0.0 Aldolase-type TIM barrel family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF03060 [flax] [poplar] NMO Nitronate monooxygenase
Representative CDS sequence Show only first row Show all	>Lus10006545 pacid=23149201 polypeptide=Lus10006545 locus=Lus10006545.g ID=Lus10006545.BGIv1.0 annot-version=v1.0 ATGAGCGAATTGATCAAGAGAACTAGAAGTTTAACCAACAAGCCATTCGGAATAGGATTAGTCCTAGCTTTCCCCCACGAAGAGAACTTGAAGGCAATAC TACAAGAGGAAGTAAGTGTTCTACAAGTTTACTGGGGGGAATGCTCCACGGAACTTGTAGATAAAGCTCACGCCGCTGGCGTCATGGTAATCCCTCAAGT AGGCAATGTGGAATCCGCAAAGAAAGCTGCCGAATCTGGTGTTGATGCAATCATCGTCCAAGGCCGCGAAGCTGGAGGCCACGTCATCGGCCAGGAAGGG CTGATGTCACTAGTGCCAAGGGTGGTGGATGCTGTTGGTGGGATAATACCAGTAATTGCAGCTGGCGGAATTGTGAATGCTCGTGGGTATGTTGCTGCTC TGGCTCTTGGTGCTCAAGGTGTGTGTTTAGGGACCAGCTCGGTGGCCGAATGCGCCAGAGCGTGGGTTGGTAACGACTTTTATGAACCGGAATGGGAAGT TGCTCCGAAGAATGTGACTGAGCTTGATCATCCTGTCATTCATGGCCAGGAGAAAGAGATACGGATGCTTGGCGGCACGGTACCGAATGCAGGAGCAACC GGTGAGATCGAGAGCATGGCGATGTATGCTGGTCAAGGAGTTGGTATGATCAAGGACATTCCTGCTGCTTCTCAAGTTGTTGATAGCCTTGTTCATGGAG CTCAGCAGCTCATTCTCCAACAGTTTTCTGCTTAA
AA sequence Show only first row Show all	>Lus10006545 pacid=23149201 polypeptide=Lus10006545 locus=Lus10006545.g ID=Lus10006545.BGIv1.0 annot-version=v1.0 MSELIKRTRSLTNKPFGIGLVLAFPHEENLKAILQEEVSVLQVYWGECSTELVDKAHAAGVMVIPQVGNVESAKKAAESGVDAIIVQGREAGGHVIGQEG LMSLVPRVVDAVGGIIPVIAAGGIVNARGYVAALALGAQGVCLGTSSVAECARAWVGNDFYEPEWEVAPKNVTELDHPVIHGQEKEIRMLGGTVPNAGAT GEIESMAMYAGQGVGMIKDIPAASQVVDSLVHGAQQLILQQFSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	0	1
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	1.7	0.9246
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	2.0	0.8940
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	5.1	0.8754
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	13.8	0.9126
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	15.3	0.8901
AT5G19580			glyoxal oxidase-related protei...		Lus10043231 [exp]	15.7	0.7843
					Lus10009852 [exp]	18.1	0.7951
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	18.7	0.8989
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	18.7	0.8188
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	20.9	0.8931

Compare expression of checked genes

Lus10006545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.