Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18280 633 / 0 ATAPY2 apyrase 2 (.1.2) AT3G04080 606 / 0 ATAPY1 apyrase 1 (.1) AT1G14240 156 / 4e-42 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT2G02970 150 / 2e-39 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 148 / 7e-39 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 146 / 2e-38 GDA1/CD39 nucleoside phosphatase family protein (.1) AT4G19180 86 / 2e-17 GDA1/CD39 nucleoside phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042528 [exp] 781 / 0 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 682 / 0 AT5G18280 558 / 0.0 apyrase 2 (.1.2) Lus10030470 [exp] 135 / 2e-34 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 129 / 7e-32 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10021989 [exp] 117 / 1e-27 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039953 [exp] 106 / 2e-24 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 104 / 9e-24 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 86 / 2e-17 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 84 / 6e-17 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G031000 [exp] 650 / 0 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053500 [exp] 647 / 0 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031200 [exp] 457 / 2e-158 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053700 [exp] 309 / 2e-102 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.008G086400 [exp] 140 / 6e-36 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 139 / 2e-35 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 100 / 3e-22 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 89 / 1e-18 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G236900 [exp] 88 / 3e-18 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 60 / 2e-09 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10006546 pacid=23149190 polypeptide=Lus10006546 locus=Lus10006546.g ID=Lus10006546.BGIv1.0 annot-version=v1.0 ATGAACAAGCGCGGTGCCCTCCGCCACGAAAGTTTGTCCGATAAGATCCACCGCTACCGGAGCGTTCTGTTGGTGATCTCGATCCCGCTGCTGCTGATCG CGTTTGTGCTTTTTGTGATGCCTGGAAGGGAAGATTACGCGATCAGTAATCGGAAAGTTTCGCCGAGCTTGAAAGGCTCTAATAACTATGCTGTTATTTT CGATGCTGGGAGTTCTGGGAGTAGAGTCCATGTCTTCTGTTTTGACTCCAGGATGGATCTCGTTCCGATTGGCAAAGATCTTGAGCTTTTTGAGCAGCTT AAGCCTGGGTTGAGCTTCTATGCGAAGGACCCGCGGGCGGCGGCGGAGTCGCTCACTTCTCTACTCGATAAGGCAGAAGCTGCTGTGCCGAAGCAATTAC GGCCGAAGACTCCAGTTAGAGTTGGGGCAACTGCAGGCTTGAGAACATTGGAAGGCGATGCATCTGATCGGATTTTGCAAGAGGTTAGGGATCTTCTGAA AGATCGAAGTACCTTCAAATCTGATGTGAATGCGGTCACTGTCTTGGATGGTTCTCAAGAAGGTTCTTATCAATGGGTCACCATAAATTATCTCTTGGGT AAGTTAGGGAGGTCATATGCCAGTACAGTTGGGGTAGTTGATCTTGGTGGTGGATCTGTCCAAATGGCATATGCAATACCTGAGGCAGATGCAGCAAAAT CTCCGAGGGTGACAGGTGGAGAGGATACCTATGTACATAAAATGTTACTGAAGGGAGTAACATATTACCTCTATGTTCACAGCTATTTGCATTATGGGTT ATTGGCTGCTAGAGCAGAGATTTTGAAGGTTTCCGAAGGGTCTTCAAATCCATGCATTTTGGCTGGTTATGATGGTATGTTGAAATGCTCAATTCTTTGC CAATCAGAAGGGACTTTCACTGAATGCTCGCTCACTTCTTTTCTGCTTATCATCGAAGGTACTTATAACTACGGCGGAGAGAAATTCAAAGCATCTGCAT CTCCTGGAGGTTCTAACTTGGCAGAATGCAGAAGGGTAGCTACTAGAGCACTGAGAATTAACGAGACAACATGTGATCATATGAAATGCACCTTTGGCGG AATATGGAATGGTGGCGGTGGAGATGGTCAAAAGAACCTATTCGTCGCATCATTTTTCTTTGATAGAGCTGCTGAGGCAGGTTTCATCAACTCCAAATTA CCTGTTTCGAAAGTCCGTCCTTCTGATTTCGAGGAGGCAGCTCGACGTGCTTGCGAAACTAAGCTCGACGCTGGGAAGTCTACTTACCCAGACGTGGAAG AGGGTAACCTACCATATCTTTGCATGGACCTTGTCTACCAGTACACATTGCTGGTGGATGGATTTGGTCTCAGTCCATGGCAAGACATCACACTGGTGAA GAAGGTTAAATACGGAGACTCTCTTGTTGAAGCGGCATGGCCATTAGGTAGCGCCATCGAGGCCGTCTCAGCGTTATGA
AA sequence Show only first row Show all	>Lus10006546 pacid=23149190 polypeptide=Lus10006546 locus=Lus10006546.g ID=Lus10006546.BGIv1.0 annot-version=v1.0 MNKRGALRHESLSDKIHRYRSVLLVISIPLLLIAFVLFVMPGREDYAISNRKVSPSLKGSNNYAVIFDAGSSGSRVHVFCFDSRMDLVPIGKDLELFEQL KPGLSFYAKDPRAAAESLTSLLDKAEAAVPKQLRPKTPVRVGATAGLRTLEGDASDRILQEVRDLLKDRSTFKSDVNAVTVLDGSQEGSYQWVTINYLLG KLGRSYASTVGVVDLGGGSVQMAYAIPEADAAKSPRVTGGEDTYVHKMLLKGVTYYLYVHSYLHYGLLAARAEILKVSEGSSNPCILAGYDGMLKCSILC QSEGTFTECSLTSFLLIIEGTYNYGGEKFKASASPGGSNLAECRRVATRALRINETTCDHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFINSKL PVSKVRPSDFEEAARRACETKLDAGKSTYPDVEEGNLPYLCMDLVYQYTLLVDGFGLSPWQDITLVKKVKYGDSLVEAAWPLGSAIEAVSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	0	1
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	1.0	0.9633
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	2.0	0.9290
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	2.0	0.9440
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	3.5	0.9234
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	3.7	0.9226
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	3.9	0.9387
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10015099 [exp]	3.9	0.9040
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	4.5	0.9268
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	5.1	0.9097
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	6.0	0.9162

Compare expression of checked genes

Lus10006546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.