Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 804 / 0 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 773 / 0 ATRPA70D Replication factor-A protein 1-related (.1) AT2G06510 295 / 8e-92 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G45400 282 / 1e-84 ATRPA70C Replication factor-A protein 1-related (.1) AT4G19130 273 / 7e-82 Replication factor-A protein 1-related (.1) AT1G52950 81 / 8e-16 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040517 [exp] 994 / 0 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 992 / 0 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003268 [exp] 415 / 8e-141 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023805 [exp] 273 / 6e-81 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 269 / 8e-80 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10034737 [exp] 192 / 1e-53 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 186 / 8e-52 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033435 [exp] 161 / 6e-45 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033272 [exp] 125 / 7e-30 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057300 [exp] 894 / 0 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.018G065300 [exp] 285 / 4e-87 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.003G102700 [exp] 284 / 2e-85 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.019G061550 [exp] 59 / 7e-09 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 52 / 5e-07 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165480 [exp] 51 / 1e-06 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10006548 pacid=23149208 polypeptide=Lus10006548 locus=Lus10006548.g ID=Lus10006548.BGIv1.0 annot-version=v1.0 ATGGCAAAATCAGCGACCCCAGATGCCATCTCAACTCTGCTCTCAATTCCGAAGCCCGATTCCCCTTCCGTTCTCCCTGAGATCGTAGTTCAAGTGACTA ACCTCCAGCCGAAAGGCAAAGCGTACGGCTTCGATGCTAACGATGGAAAGATGAAGCTGACGTCACTCTTCAACTCGCGCATGTCTCCTGAGATCATCTC TGGAAAGGTTCAGAATCTAGGTCTCATACGGATCCTTGATTACACCATCAACGAGATTCCAAACAAGGCTGAGAAATACATGATTATCACCAGCTATGAA GTGGTTTCTACTGCATTCGAGTCTGAGATTAAAAATGGCCCTCAAGAACTTCCAGGGATTGTACTGAACCAGAAGAACGAAACTGTTACCAAATCTGCTG CTCAGATTGTAAATGAACAAAGGGGAAATACGGCTCCTACAGCTCGAACGGCGATGACTCGCAGGGTTCACCCTCTAGTATCTCTGAATCCTTACCTAGG GAACTGGACCATAAAGGTTAGGGTTACAAGCAAAGGGAACATCCGCACCTATAAGAACATGAGAGGTGAAGGATGCCTTTTCAATGTTGAGTTAACAGAT GAAGATGGTACTCAAATACAAGCAACAATGTTCAACGAAGCTGCAAAGAAATTCTATGAGAGGTTCCAGCTCGGAAAAGTTTATTACATTTCGAAGGGAT CTCTTAGAGTTGCTAACAAGCAGTATCAGACGGTTGTAAATGATTATGAGATGACTTTGAATGAGAGCTCTGAAGTTGAAGAAGTAGTCAGTGAAGAAGT TAAGATTCCAGAGACGAAGTTTAATTTCGTTCCAATTGATCACTTGGGTCCCTATGTCAATTCCAAAGATCTTGTTGATATCATTGGAGTTGTTCAAAGT GTGTCTCCTACACTGAGTGTTAGAAGGAAAAGTGATAACGAGCCTATTCCAAAGCGTGATATTGTCATTGGAGATGAAAGTAAGAAGACTGTAGTTGTTT CTTTGTGGAGTGAGCTTGCGACTGGCACTGGCCAGGAATTGCTCGATATCGCTGATAAGAACCCTGTCGTTGCTATTAAAGCTCTGAGAGTTGGAGACTT TCAAGGCGTAACTTTGTCCACAGTGGGAAAAAGCATGTTGCAGGTCAACCCTGACATTCCAGAATCAAAGAAACTGAGATCATGGTATGATTCTGATGGC AAAGACAGTTCTATGGCCCCTATTGGTTCTGGAATGAGCCCTTCAATCAAGAGCGGGGGAAGGTCTATGTACACTGACCGAGTTCCATTGTCTCATATAA TTGAGGACACTTCATTAGGTGGTGATAAGCAGCCTGCATTTTTCACGATTAGAGCGAATATAAGCTTTATCAAGCATGATCAGACCATGTGGTACCGAGC TTGCAAGACTTGCAACAAGAAAGTGACTGATGCCATTGGTGGTGGATACTGGTGCGAAGGATGCCAGAAGAATGATTCCGAATGTAGCTTAAGGTACATA TTGGTTGTCAAAGTCTGCGATAAAAGTGGAGAAGGATGGATTTCTTCCTTCACTGAAGAAGCAGAGCAGATTCTTGGTTGCACTGCTGATGAACTTGATC AACTGAAATCAGAGGATGACGGAAGTGCATACTTGGCAAAGCTGAAAGCAGCGACATGGAATCAGTACTTGTTCAGGGTGAGTGTTACTCAGAATGAGTA CAACAATGAGAAGAGGCAGAGGATAACAGCAAAGGCAATAATGAGCCCAGTTGATTTTGCTGCTGAGTCCAAGTTCTTGCTACAAGAGATCTCAAAGGGA ATGCAATCTCAGTAG
AA sequence Show only first row Show all	>Lus10006548 pacid=23149208 polypeptide=Lus10006548 locus=Lus10006548.g ID=Lus10006548.BGIv1.0 annot-version=v1.0 MAKSATPDAISTLLSIPKPDSPSVLPEIVVQVTNLQPKGKAYGFDANDGKMKLTSLFNSRMSPEIISGKVQNLGLIRILDYTINEIPNKAEKYMIITSYE VVSTAFESEIKNGPQELPGIVLNQKNETVTKSAAQIVNEQRGNTAPTARTAMTRRVHPLVSLNPYLGNWTIKVRVTSKGNIRTYKNMRGEGCLFNVELTD EDGTQIQATMFNEAAKKFYERFQLGKVYYISKGSLRVANKQYQTVVNDYEMTLNESSEVEEVVSEEVKIPETKFNFVPIDHLGPYVNSKDLVDIIGVVQS VSPTLSVRRKSDNEPIPKRDIVIGDESKKTVVVSLWSELATGTGQELLDIADKNPVVAIKALRVGDFQGVTLSTVGKSMLQVNPDIPESKKLRSWYDSDG KDSSMAPIGSGMSPSIKSGGRSMYTDRVPLSHIIEDTSLGGDKQPAFFTIRANISFIKHDQTMWYRACKTCNKKVTDAIGGGYWCEGCQKNDSECSLRYI LVVKVCDKSGEGWISSFTEEAEQILGCTADELDQLKSEDDGSAYLAKLKAATWNQYLFRVSVTQNEYNNEKRQRITAKAIMSPVDFAAESKFLLQEISKG MQSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10006548 [exp]	0	1
AT3G29300			unknown protein		Lus10023634 [exp]	2.0	0.9480
AT5G59010			Protein kinase protein with te...		Lus10016454 [exp]	5.1	0.9360
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	8.4	0.9466
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	10.4	0.9431
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	11.3	0.9385
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	12.0	0.9382
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	13.0	0.9424
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	14.4	0.9004
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	15.3	0.9398
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	15.3	0.9418

Compare expression of checked genes

Lus10006548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.