Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39050 246 / 5e-80 ArathEULS3 Euonymus lectin S3, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003266 [exp] 119 / 3e-33 AT3G04720 89 / 2e-23 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G031500 [exp] 278 / 4e-92 AT2G39050 243 / 7e-79 Euonymus lectin S3, hydroxyproline-rich glycoprotein family protein (.1) Potri.013G054100 [exp] 276 / 3e-91 AT2G39050 253 / 2e-82 Euonymus lectin S3, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006551 pacid=23149173 polypeptide=Lus10006551 locus=Lus10006551.g ID=Lus10006551.BGIv1.0 annot-version=v1.0 ATGGAGTTCCCCGGCAGCCACAACCACCACCACGTCAGCCACCATCACAACCGCCCAGATGACTCCGACAACGAGGACGACAGGCGATCCGCCAATTTCT ACCCACCGCTGGCTTTCCCGCCGCAACCGCCTGCTCCGTTCGGATCGGGTCAAAACTACCCGGCTCCTCCGCCGCAGTCGGATCGCTTCTACGAAGCACC GCCGCCACCGCCGAACCCCTACCACGAGGAAAACCAAGTCTTCCACACCTCCCATGTCCCGTCCCAACCTTACGGTGGCGGAAGCGGGTATAACCCCACT CCCAATTTTCCTCCACAGCCGACTCATCACCAGGACTCCTACGGCGGAGGTGGATATAATCCTACTCCGAATTTCCCTCCGCAGGCGACTCATAATGAGT CCTCCTATGGCGGAATTGGGCACAGCCAGAATTATCCTTCACAAGTGACGCATGTCTCCCATGAAGTCACGGGCGGGAAGACTCATCATTCTTCTGGACC CGTCCCTGGGCTTGATCTAGCTAGCAAGCCTTCTTACAAGGTGTATAGCAAGGCCAATCCTGACTTCAATCTCACCATTAGGGATGGTAAAGTAATGATG GCTCGAGCCGATCCTCATGATCCCTGCCAGAACTGGTTCAAGGATGAGAAGTACAGTACAAGAGTAAAGGATGAGGAAGGGTGTCCTTGCTTTGCTTTGG TCAATAAGGCTACTGGTCAGGCTATGAAGCACTCCATTGGAGACACTAAACCTGTTCAGCTGATACCTTATAAACCAGATCATCTGGACGAGTCGGTCCT ATGGACTCAGAGCAGGGACATGGGCGAGGGTTACAGAACCACGAGGATGGTGAACAACATTCGCCTGAATGTTGATGCTTTCCATGGGGACAAGAGCTCT GGTGGAGTCCGTGACGGCACCACCATTGTGCTGTGGCAGTGGAACCAAGGAGACAACCAGCTCTGGAAGATCGTCCGACAGTGTAAGTTGGTTCCTTGGT AA
AA sequence Show only first row Show all	>Lus10006551 pacid=23149173 polypeptide=Lus10006551 locus=Lus10006551.g ID=Lus10006551.BGIv1.0 annot-version=v1.0 MEFPGSHNHHHVSHHHNRPDDSDNEDDRRSANFYPPLAFPPQPPAPFGSGQNYPAPPPQSDRFYEAPPPPPNPYHEENQVFHTSHVPSQPYGGGSGYNPT PNFPPQPTHHQDSYGGGGYNPTPNFPPQATHNESSYGGIGHSQNYPSQVTHVSHEVTGGKTHHSSGPVPGLDLASKPSYKVYSKANPDFNLTIRDGKVMM ARADPHDPCQNWFKDEKYSTRVKDEEGCPCFALVNKATGQAMKHSIGDTKPVQLIPYKPDHLDESVLWTQSRDMGEGYRTTRMVNNIRLNVDAFHGDKSS GGVRDGTTIVLWQWNQGDNQLWKIVRQCKLVPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	0	1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	1.7	0.8776
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	4.2	0.8627
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	5.7	0.8493
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	6.0	0.8577
AT4G19950			unknown protein		Lus10038358 [exp]	6.0	0.8615
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	6.5	0.8526
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	7.4	0.8560
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	7.4	0.8451
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	9.2	0.8317
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	11.2	0.8274

Compare expression of checked genes

Lus10006551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.