Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 236 / 2e-79 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1) AT3G12500 52 / 4e-08 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT2G43620 47 / 2e-06 Chitinase family protein (.1) AT2G43610 47 / 3e-06 Chitinase family protein (.1) AT2G43570 45 / 1e-05 CHI "chitinase, putative", chitinase, putative (.1) AT3G54420 43 / 5e-05 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 43 / 6e-05 Chitinase family protein (.1) AT2G43580 40 / 0.0003 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003265 [exp] 213 / 1e-70 AT3G04720 202 / 8e-67 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006557 [exp] 209 / 2e-69 AT3G04720 191 / 2e-62 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003264 [exp] 191 / 1e-62 AT3G04720 181 / 1e-58 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 183 / 2e-59 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003262 [exp] 171 / 3e-55 AT3G04720 154 / 2e-48 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020252 [exp] 137 / 8e-41 AT3G04720 135 / 4e-40 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001774 [exp] 134 / 1e-39 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 125 / 3e-36 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003266 [exp] 121 / 2e-35 AT3G04720 89 / 2e-23 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041900 [exp] 296 / 1e-103 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 293 / 2e-102 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 279 / 6e-97 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 266 / 1e-91 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.009G142000 [exp] 55 / 7e-09 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 54 / 1e-08 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 53 / 3e-08 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.019G094000 [exp] 51 / 7e-08 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G141700 [exp] 51 / 1e-07 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.019G094100 [exp] 50 / 1e-07 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10006552 pacid=23149203 polypeptide=Lus10006552 locus=Lus10006552.g ID=Lus10006552.BGIv1.0 annot-version=v1.0 ATGAAGGCATCCATGTTAGTCACTACCTTACTGCTCTGTTTCTTGGCCGCAATAGCCAGTGCTCAAAACTGCGGCAGGCAAGCCGGCGGCCAAACCTGCG CCAACAACCTCTGCTGCAGCCAATATGGTTACTGTGGGACCACCGACGACCACTGCTCCCCTTCCAAGGCTTGCCAGAGCAACTGCAAGCCAGCCAGTGG CGGTGGGGGCACCGGTGGTGGTGGTGGTGGTGGAGACAGTGCTACTAACGTGAGGGCCACGTATCATATGTACGAACCTGAAAAGATTGGATGGAACTTG ATGACTGCTAGCGCTTACTGTTCAACTTGGGATGCCAGCAAGTCCTTGGCTTGGCGCCAGAAGTACGGCTGGACCGCCTTCTGCGGACCCGTTGGACCCA CGGGTCAAGCCTCTTGCGGCCGCTGCTTGAGGGTGACGAACAAAGGAACTGGAGCGCAAGAGACGGTGAGAATTGTCGACCAGTGTAGCAACGGAGGTCT GGATCTGGACGTCGGCGTTTTCAGGAGAATCGATACCGACGGAAGAGGAAATGCTCAGGGCCACCTCATGGTTGACTATCAATTTGTTAACTGTGGAGAC TAA
AA sequence Show only first row Show all	>Lus10006552 pacid=23149203 polypeptide=Lus10006552 locus=Lus10006552.g ID=Lus10006552.BGIv1.0 annot-version=v1.0 MKASMLVTTLLLCFLAAIASAQNCGRQAGGQTCANNLCCSQYGYCGTTDDHCSPSKACQSNCKPASGGGGTGGGGGGGDSATNVRATYHMYEPEKIGWNL MTASAYCSTWDASKSLAWRQKYGWTAFCGPVGPTGQASCGRCLRVTNKGTGAQETVRIVDQCSNGGLDLDVGVFRRIDTDGRGNAQGHLMVDYQFVNCGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006552 [exp]	0	1
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	6.7	0.9816
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	8.1	0.9760
					Lus10000527 [exp]	11.0	0.9738
AT1G35210			unknown protein		Lus10010343 [exp]	12.6	0.9771
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	12.6	0.9435
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014226 [exp]	12.7	0.9604
					Lus10002336 [exp]	16.4	0.9729
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	16.4	0.9729
					Lus10003173 [exp]	19.3	0.9728
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	19.5	0.9748

Compare expression of checked genes

Lus10006552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.