Gene [FLAX] | FIBexDB

Lus10006554 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT5G25610	45 / 6e-06		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10003263 [exp]	164 / 1e-50	AT5G25610	266 / 7e-87	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Lus10022114 [exp]	83 / 4e-19	AT5G25610	357 / 5e-121	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Lus10007674 [exp]	80 / 6e-18	AT5G25610	353 / 2e-119	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G243600 [exp]	63 / 3e-12	AT5G25610	299 / 2e-98	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.006G243700 [exp]	63 / 3e-12	AT5G25610	319 / 4e-107	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.018G036700 [exp]	59 / 1e-10	AT5G25610	307 / 2e-101	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.004G136900 [exp]	54 / 4e-09	AT5G25610	211 / 2e-65	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.004G136000 [exp]	54 / 6e-09	AT5G25610	211 / 3e-65	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.T012700 [exp]	47 / 8e-07	AT5G25610	214 / 2e-66	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.T012500 [exp]	46 / 2e-06	AT5G25610	208 / 4e-64	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)

PFAM info

Representative CDS sequence

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>Lus10006554 pacid=23149211 polypeptide=Lus10006554 locus=Lus10006554.g ID=Lus10006554.BGIv1.0 annot-version=v1.0

ATGAAGTACTTCAATCCTCTCTATGTTCTTGGATTAAGTCTCACTATTTCCGTTGCCGCTACACAGGCAGCCACTACTCCTGAACTCTACTGGAAATCAG

TCCTCCCAAGCACACCCATGCCAAAAGCTGTCACTGATCTCTTGCAGCCAGCACAACCGTTGGTGTCCCAGCTGGGAAGCCCGGGGCTAGAACAAATGTT

GGAGTATCAAAGCCACCACGTAGAGAAGCCAGTGAAGAGCCTGTTCGTGGTCTACAGCGTTGCTGCCACTCAGGAACAACTAAATGATGACACTAATGCA

GAAATCTTTTTCCTGGAGAAAGATATGCACCCTCGCAAAGCCATCCACTTGGATTTCACCGAGTCCACCCCACAAAGAGCAACCTTCTTACCTCGCAAGT

TGCCGACTCGATACCATTCTCGTCTGAAAAGCTGCCCGAGATCTTCAACGAATTCGAGGTAA

AA sequence

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>Lus10006554 pacid=23149211 polypeptide=Lus10006554 locus=Lus10006554.g ID=Lus10006554.BGIv1.0 annot-version=v1.0

MKYFNPLYVLGLSLTISVAATQAATTPELYWKSVLPSTPMPKAVTDLLQPAQPLVSQLGSPGLEQMLEYQSHHVEKPVKSLFVVYSVAATQEQLNDDTNA

EIFFLEKDMHPRKAIHLDFTESTPQRATFLPRKLPTRYHSRLKSCPRSSTNSR

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006554 [exp]	0	1

Lus10006554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.