Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 191 / 2e-62 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003262 [exp] 228 / 5e-78 AT3G04720 154 / 2e-48 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003265 [exp] 228 / 3e-77 AT3G04720 202 / 8e-67 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006552 [exp] 212 / 1e-70 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003264 [exp] 207 / 2e-69 AT3G04720 181 / 1e-58 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 195 / 1e-64 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020252 [exp] 130 / 7e-39 AT3G04720 135 / 4e-40 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001774 [exp] 127 / 1e-37 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 122 / 1e-35 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003266 [exp] 100 / 7e-28 AT3G04720 89 / 2e-23 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054000 [exp] 203 / 2e-67 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041900 [exp] 203 / 2e-67 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 201 / 2e-66 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 199 / 7e-66 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10006557 pacid=23149180 polypeptide=Lus10006557 locus=Lus10006557.g ID=Lus10006557.BGIv1.0 annot-version=v1.0 ATGGAGAGATCGTCGAGTAGCAGCAGTTATACTGCAGTTCTGTTCTTCACCTTGCTGCTGTTCAGTTTGTTAGCAGCAATCGCCGACGGTCAAAGGGCTT CGAACGTGAGGTCAACGTATCATCTGTACAACCCTCAGAAGATTGGATGGGACTATATCAAAGCTGGCGCTTACTGTGCAACCTGGGACGCCAAGAAGCC CCTGGCTTGGCGCAAGAAGTACGGCTGGACTGCCTTCTGTGGGCCCGTCGGACCCCGCGGTAGAGCCTCTTGTGGCCGCTGCTTAAAGGTGACGAACAGA GGAACGAGAGCTCAAGCAACAGTGAGAATAGTGGACCAGTGTAGCAATGGAGGTCTGGATCTGGACATCAATGTATTCAAGAAGATCGATACCGATGGCA AAGGGTATGCTCGAGGACACCTCATGGTTGACTATCAGTTCGTCAACTGCCGTGACAAGAAAATTGAAACTATTGCTTTGGAACATGAAAGTACAGCATA A
AA sequence Show only first row Show all	>Lus10006557 pacid=23149180 polypeptide=Lus10006557 locus=Lus10006557.g ID=Lus10006557.BGIv1.0 annot-version=v1.0 MERSSSSSSYTAVLFFTLLLFSLLAAIADGQRASNVRSTYHLYNPQKIGWDYIKAGAYCATWDAKKPLAWRKKYGWTAFCGPVGPRGRASCGRCLKVTNR GTRAQATVRIVDQCSNGGLDLDINVFKKIDTDGKGYARGHLMVDYQFVNCRDKKIETIALEHESTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006557 [exp]	0	1
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020480 [exp]	2.8	0.9339
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10013572 [exp]	4.1	0.9119
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	4.9	0.9239
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	5.5	0.9226
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	5.7	0.9157
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	8.1	0.9156
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	10.2	0.9226
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	10.3	0.9279
AT2G43590			Chitinase family protein (.1)		Lus10035624 [exp]	11.6	0.9137
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	12.2	0.9235

Compare expression of checked genes

Lus10006557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.