Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 249 / 3e-79 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 204 / 1e-61 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 93 / 2e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003261 [exp] 655 / 0 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 243 / 1e-76 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 242 / 1e-76 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10014749 [exp] 218 / 9e-67 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 200 / 6e-60 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10039845 [exp] 43 / 0.0005 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10018609 [exp] 42 / 0.0007 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042000 [exp] 350 / 5e-118 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 315 / 2e-104 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 256 / 1e-81 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 239 / 4e-75 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 213 / 6e-65 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 172 / 1e-49 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 149 / 8e-42 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.011G056300 [exp] 47 / 2e-05 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G047000 [exp] 45 / 6e-05 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.017G013000 [exp] 42 / 0.0008 AT5G44280 355 / 3e-117 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006558 pacid=23149197 polypeptide=Lus10006558 locus=Lus10006558.g ID=Lus10006558.BGIv1.0 annot-version=v1.0 ATGGTGCTGGCCGGGAAGAAGCCGGTGGGAAAAGTGAAGAGGTCGACATTAGAGGCATGCATGACATGCCCTCTCTGCAATAAGCTCCTCCGTCAAGCTA CCACCATCTCCCTCTGCCTCCATACCTTCTGCAGAAAGTGCATATATGACCTGCTCTCGGATGAGGAAGTTGATACCTGTCCTGTGTGCGACATTGACCT GGGTATTCTGCCAGTTGAGAAACTCAGGCCGGATCACAACTTGCAAGATATAAGGGCTAAAGTATTTCCCTTGAAGAGTAAAAAAGTTGAGCCTGCTAAG GTTGTCACTTCCATTGCAGCACTGCCAGCAAAGAGAAAAGAGAGATCATTATCGTCTTTGGTGGTTAGCACTCCCAAAGTGCCTGAAGAAGCTAGTTTGA CTAGAAGGAAAACTAAGCCTAGTGCAAAGAAACTTGCTGGATTACGGGGTTGTGCATTTACGACAGAAGAATCCAACAAAGATGAGGATTCTTCTGCAGA AGATCATCCAATGAGCGAAAGCTCCCCTGAGTCTGAGAATAAAACTCCACAAATGGAAACGCAGGATTCTGCTGCTGCTGAGGCTTCCAATGAGGAACAA ACGAATGAAAAAGGAGGGGAAGATGGTGAAATAGTAGAAGGGAGAGCTGATCTGTGGACACCATTAAACTGTCTCGTCGAAGCTCTTAACAAAACAAAGG CTTCTTCGAAGTCTAACTCTCTGGTGCAGCCTGCTGCCAAACTACTAGAGTTGTCAAATGGACATAACTTTGGACCGAATTCCTTGGAGAAAATAGGAAG AGTAGGGTCTCCTGCTGGTAATGGCAGTGAAACATATATCGCCAAAAGCAAAAGCAAAGAACATGATCACAGAATCAATGTTCAAGGTGAAGTGCAGGAC ATGAATGCAGATGCCCCGCCAGTTAAGCGTAGAAGACTAACCGCTGCACGAAGAAGGGCAGCTTTGTCAGAAGAACTTAGTGCCTCAACACAAATCATAC TGGATGCTGCAATGAAAAATGGCAACAGAAGGGACCTTCCTGTTTGGGTCTCGTTGGTTGCCTCCAACGTCAAGAATGAAGATGCTGCATTACCTCAGAT TCCTACTTGTTACTTAAGGATCAAGTGA
AA sequence Show only first row Show all	>Lus10006558 pacid=23149197 polypeptide=Lus10006558 locus=Lus10006558.g ID=Lus10006558.BGIv1.0 annot-version=v1.0 MVLAGKKPVGKVKRSTLEACMTCPLCNKLLRQATTISLCLHTFCRKCIYDLLSDEEVDTCPVCDIDLGILPVEKLRPDHNLQDIRAKVFPLKSKKVEPAK VVTSIAALPAKRKERSLSSLVVSTPKVPEEASLTRRKTKPSAKKLAGLRGCAFTTEESNKDEDSSAEDHPMSESSPESENKTPQMETQDSAAAEASNEEQ TNEKGGEDGEIVEGRADLWTPLNCLVEALNKTKASSKSNSLVQPAAKLLELSNGHNFGPNSLEKIGRVGSPAGNGSETYIAKSKSKEHDHRINVQGEVQD MNADAPPVKRRRLTAARRRAALSEELSASTQIILDAAMKNGNRRDLPVWVSLVASNVKNEDAALPQIPTCYLRIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10006558 [exp]	0	1
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	21.4	0.8684
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	23.4	0.8577
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	26.1	0.8877
AT2G37500			arginine biosynthesis protein ...		Lus10003981 [exp]	33.8	0.8850
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Lus10011372 [exp]	44.1	0.8495
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	50.1	0.8692
AT3G21865		PEX22	peroxin 22 (.1)		Lus10027155 [exp]	53.4	0.8739
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	72.4	0.8402
AT2G03820			nonsense-mediated mRNA decay N...		Lus10025109 [exp]	76.7	0.8616
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10025416 [exp]	81.8	0.8307

Compare expression of checked genes

Lus10006558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.