Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04710 580 / 0 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G12400 93 / 6e-20 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT2G03430 88 / 2e-19 Ankyrin repeat family protein (.1) AT1G62740 88 / 2e-18 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G12270 85 / 3e-17 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G35230 84 / 3e-17 BSK1 BR-signaling kinase 1 (.1) AT2G14255 78 / 3e-15 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT1G04190 77 / 3e-15 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31820 74 / 7e-14 Ankyrin repeat family protein (.1) AT5G20350 73 / 1e-13 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003260 [exp] 910 / 0 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10028919 [exp] 88 / 2e-18 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 84 / 5e-17 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 80 / 3e-16 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032234 [exp] 79 / 2e-15 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 79 / 2e-15 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10003329 [exp] 77 / 7e-15 AT4G35230 732 / 0.0 BR-signaling kinase 1 (.1) Lus10021905 [exp] 75 / 2e-14 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020505 [exp] 74 / 7e-14 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042300 [exp] 643 / 0 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 639 / 0 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G219201 [exp] 238 / 4e-74 AT3G04710 221 / 9e-68 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G161300 [exp] 91 / 2e-20 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.003G113400 [exp] 86 / 8e-18 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.004G182800 [exp] 82 / 2e-16 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 81 / 3e-16 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.001G119500 [exp] 81 / 5e-16 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.018G121200 [exp] 78 / 5e-15 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.010G082900 [exp] 75 / 1e-14 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10006559 pacid=23149204 polypeptide=Lus10006559 locus=Lus10006559.g ID=Lus10006559.BGIv1.0 annot-version=v1.0 ATGGCTCCTGATGCTTCCGAAGCCCTTATTGTTAGAGAGAAAGTCAAGAACTTTCTCAGTGCTTCTCTTACAGGGAACTTGGATCTTCTCAAGGCCTTTG CTGCTGAGCTCGACGAGGGTCAAGGAATGGCTAAAACTGTGGCCGCCATTAAGGACGCCAAGCAACGTGGGGCGCTTCATTTTGCTGCAAGAGAAGGAAA GACTGAAATCTGCAAGTTCTTGGTGGATGAGTTGAAGTTGGACGTCGACACTAAAGATGAAGATGGAGAAACACCTCTTCTCCATGCTGCTAGGCAAGGG CATAATGACACTGCTAAGTACCTCCTCGAGCGTGGTGCAAATCCCGGTATAGCCAGTGATATGGGGGTTACTGCGTTGCATCACTGTGCAGGGGAAGGAA ACATTGAATTGATGAAGTACTTACTTTCAAAGGGTATGAAGGTTGACTTAGACAGTGATGCTGGGACGCCTTTAGTTTGGGCTGCTGGACATGGTCAGAA TGATGCTTTGAAAGTTTTGTTAGAACACAATGCTAATCCGAATGCTGAAACTGAAGATGGTGTAACTCCGTTATTATCAGCCGTTGCTGCAAATTCATCA GAATGCACAGAGCTGTTGGTTCAGTCTGGGGCTTCTGCGAAGGTGATGGCTGGTGGCGCAACACCATTACACATTGCTGCAGACCACGGGAACATGGAAA TATTGAAATGTTTACTGGAAGCTAGCGCTGATCCTAACATCGCTGATGAAGATGGTCTTAAGGCAATACAGGTAGCAGCATCGAGAGGCAATCATGCAGC TGTTGAGATCCTTTTACCTATGACGTCGAAAATTGAAATTATTCCCGAGTGGACTGTTGACGGGATCATCAGATATGTGCAATCCGAAACTGACAAGCAA GAGGAACGAGCAAGGAACGCAACACAAGCCAATGGTTCACATCATGCCGTGTTACCCAAGAAAGATCTTCCCGAGGTGTCGCCAGAAGCGAAAGCAAAAT CTGTAGAAGCAAAATCCAGAGGAGATGAAGCTTTCAGAAGGAAGGACTATCGGACTGCTGTTGATGCTTATAGCCAGGCGATTGATTTCGACCCAACCAA TGGAAACTTGTTTTCGAATCGAAGTCTCTGTTGGGTACTGTTGGGAGTAGGCGAGCACGCCTTGAGAGATGCAAGAGAATGCACAGCACTGAAGCCAGAC TGGCCGAAAGCTTGGTACCGGGAAGGAGCAGCTCTACGTTTGCTCAAGAGGTTTGAAGAAGCAGCGAATGCGTTTTTCAAGGGAGTGCAGCTTGACCCGG ATAGCATCGAACTTGGACAAGCCTTCAAGGAAGCCGTGGATGCTGGGAGGAAGTTTCATAGTAAGGAGAAGGGGAATTCATCGTGA
AA sequence Show only first row Show all	>Lus10006559 pacid=23149204 polypeptide=Lus10006559 locus=Lus10006559.g ID=Lus10006559.BGIv1.0 annot-version=v1.0 MAPDASEALIVREKVKNFLSASLTGNLDLLKAFAAELDEGQGMAKTVAAIKDAKQRGALHFAAREGKTEICKFLVDELKLDVDTKDEDGETPLLHAARQG HNDTAKYLLERGANPGIASDMGVTALHHCAGEGNIELMKYLLSKGMKVDLDSDAGTPLVWAAGHGQNDALKVLLEHNANPNAETEDGVTPLLSAVAANSS ECTELLVQSGASAKVMAGGATPLHIAADHGNMEILKCLLEASADPNIADEDGLKAIQVAASRGNHAAVEILLPMTSKIEIIPEWTVDGIIRYVQSETDKQ EERARNATQANGSHHAVLPKKDLPEVSPEAKAKSVEAKSRGDEAFRRKDYRTAVDAYSQAIDFDPTNGNLFSNRSLCWVLLGVGEHALRDARECTALKPD WPKAWYREGAALRLLKRFEEAANAFFKGVQLDPDSIELGQAFKEAVDAGRKFHSKEKGNSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	0	1
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	2.2	0.7938
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10014190 [exp]	11.2	0.7147
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10043164 [exp]	11.5	0.6875
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10019121 [exp]	14.4	0.6582
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	15.6	0.7798
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10041456 [exp]	24.7	0.6864
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10001350 [exp]	25.1	0.7352
AT5G64830			programmed cell death 2 C-term...		Lus10021075 [exp]	25.4	0.7004
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	30.3	0.7483
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	32.0	0.7356

Compare expression of checked genes

Lus10006559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.