Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08790 152 / 5e-47 Protein of unknown function (DUF1685) (.1) AT5G28690 139 / 4e-42 Protein of unknown function (DUF1685) (.1) AT3G04700 132 / 2e-39 Protein of unknown function (DUF1685) (.1) AT3G04710 127 / 2e-34 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G43340 94 / 1e-24 Protein of unknown function (DUF1685) (.1) AT1G05870 94 / 2e-24 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G31560 90 / 1e-22 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT4G33985 80 / 2e-19 Protein of unknown function (DUF1685) (.1) AT3G50350 72 / 3e-16 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G15590 69 / 3e-15 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005536 [exp] 204 / 2e-68 AT5G28690 119 / 3e-35 Protein of unknown function (DUF1685) (.1) Lus10042536 [exp] 192 / 2e-63 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 188 / 2e-62 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10025562 [exp] 90 / 1e-22 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10027022 [exp] 89 / 5e-22 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10002400 [exp] 75 / 4e-17 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 72 / 3e-16 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 71 / 9e-16 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 70 / 2e-15 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042400 [exp] 167 / 3e-53 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 164 / 1e-51 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 102 / 1e-27 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 100 / 1e-26 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.007G126700 [exp] 94 / 2e-24 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 82 / 1e-19 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.009G101300 [exp] 76 / 9e-18 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.014G111000 [exp] 45 / 1e-05 AT2G46940 148 / 4e-43 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10006560 pacid=23149189 polypeptide=Lus10006560 locus=Lus10006560.g ID=Lus10006560.BGIv1.0 annot-version=v1.0 ATGGCGGTGGCCTCTGCCCCCCAGTCGCCGGCGACGACGACCGAGCTTCAGAGGATGAACCTAGGGAAGATGAAGAGCAAGCGGTGTCTGTCGAAGCAGC TGTCGATGAGGGAGACGTCGAGGGACGTGGCGTGGGAGAAGAGGCGGAGGCAGATCTTGAGGCAGGAGAGGCGGAGGTGCGGGATCCCGACGGTGGATTC ACCGGAGGATCTTACCGACGAGGATCTGAAGGAGCTTAAAGGGTGTATAGAGCTCGGGTTCGGGTTCAATGAGGAGAAAGGGCAGCATTTGGCCAATACT TTCCCGGCTTTGGATCTTTACTTCGCCGTTAACCGGCAGATTCCGCCTAGCCCTATTACGACTCCCAAACGTCGGTCCGTAGACCCCCCGCCGGTGGATA GCCCTAAAAATGACCAGGATTGGAAGATTTGCAACCCAGGTGATAACCCAGATAAAGTAAAGACAAAGTTGAGGCATTGGGCACAAGCTGTGGCCTGTTC AGTCAGACAATCTTACTAG
AA sequence Show only first row Show all	>Lus10006560 pacid=23149189 polypeptide=Lus10006560 locus=Lus10006560.g ID=Lus10006560.BGIv1.0 annot-version=v1.0 MAVASAPQSPATTTELQRMNLGKMKSKRCLSKQLSMRETSRDVAWEKRRRQILRQERRRCGIPTVDSPEDLTDEDLKELKGCIELGFGFNEEKGQHLANT FPALDLYFAVNRQIPPSPITTPKRRSVDPPPVDSPKNDQDWKICNPGDNPDKVKTKLRHWAQAVACSVRQSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08790			Protein of unknown function (D...		Lus10006560 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	5.7	0.9723
					Lus10009618 [exp]	8.4	0.9718
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	10.2	0.9718
					Lus10005830 [exp]	11.8	0.9718
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	13.2	0.9718
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036547 [exp]	14.0	0.8619
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	14.5	0.9718
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	15.7	0.9718
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	16.7	0.9718
					Lus10038463 [exp]	17.7	0.9714

Compare expression of checked genes

Lus10006560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.