Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30620 94 / 3e-23 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G06760 71 / 3e-14 winged-helix DNA-binding transcription factor family protein (.1) AT2G18050 59 / 9e-11 HIS1-3 histone H1-3 (.1.2) AT1G49950 49 / 1e-06 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G72740 48 / 3e-06 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G18035 42 / 0.0003 HON4 winged-helix DNA-binding transcription factor family protein (.1) AT1G48620 41 / 0.0005 HON5 high mobility group A5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005535 [exp] 143 / 1e-41 AT2G30620 124 / 8e-35 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005534 [exp] 98 / 6e-24 AT2G30620 116 / 9e-32 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006562 [exp] 95 / 8e-24 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10022001 [exp] 95 / 1e-22 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042541 [exp] 93 / 6e-22 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10025968 [exp] 58 / 7e-10 AT2G18050 132 / 6e-39 histone H1-3 (.1.2) Lus10014267 [exp] 55 / 3e-09 AT2G18050 102 / 1e-28 histone H1-3 (.1.2) Lus10024594 [exp] 52 / 3e-07 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1) Lus10032231 [exp] 51 / 3e-07 AT1G48620 103 / 2e-23 high mobility group A5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042700 [exp] 75 / 4e-16 AT2G30620 66 / 2e-13 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.008G162300 [exp] 67 / 2e-13 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G219800 [exp] 67 / 1e-12 AT1G06760 89 / 1e-20 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G116600 [exp] 62 / 1e-11 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.002G043100 [exp] 63 / 2e-11 AT2G30620 92 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.010G076800 [exp] 62 / 2e-11 AT1G06760 77 / 4e-17 winged-helix DNA-binding transcription factor family protein (.1) Potri.002G199900 [exp] 57 / 7e-10 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.015G040200 [exp] 59 / 9e-10 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.007G014200 [exp] 56 / 3e-09 AT2G18050 109 / 2e-30 histone H1-3 (.1.2) Potri.004G087500 [exp] 55 / 7e-09 AT1G14900 91 / 1e-22 high mobility group A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10006561 pacid=23149188 polypeptide=Lus10006561 locus=Lus10006561.g ID=Lus10006561.BGIv1.0 annot-version=v1.0 ATGACTGAAGTCGAATCTGCCGCCGTCGTCCAATTCCCCGCCGTAGATACGCCGTCGAAGAAGTCCGCCAAGGACAAATCAATCAAAGCGAAGAAGCCTG CTGCTGCTGATTCCAAGAAACCCAGGGCTCCCCGGAACTATCCTTCCTTCCAAGTGATGATTAGCGATGCGATTGTGGCATTGAAGGAGAGAACTGGATC GAGCCAGATCGCGATCACGAAGTACATCGAGGACAATCACAAGAACTTGCCGCCGAATTTCAGGAAGCTTCTGCTGAATCAGTTGAAGAGGCTCGTCGCC CTCGCGGAGCTCGTGGAAGTGAAGGCCTCGAGGCTTCTGCTGAATCAGTTGAGGAGGCTCGTCGCCGCCGAGAAGCTCGTGAAAGTGAAGGCCTCGTTCA AGTTACCTTCCGCTCGCTCCTCCCCAACCGCCGCCCCCGCCGCTAAAGCCTCTAAGAAGTCCGCCGTCGAGAAGCCGAAAGCGACGAAGGTGAAAGCCGC CGCCGCCGTCGCTACTACTAAGCCGAAGCAGAAGGCCAAATCGGCTAAGCCAACAACTGCAGTGGCTAAGCCGGCTGCGAAGGCGCAGTCGAAGAGGAAG GCTACTGACGTGGCTGCACCGAAGCTCGGTGCCAAGCCGTCCAAGTCGAAGAAAGCAAAAACCGCTTCTGCTTCAGTTAAGTCGCCGGGAAAGAAAGTTG CGGCGAAGCCGAAGAAGACGGTGCCGAAGCCCAAGAGCGTCAAATCTCCGATCAAGAAAGCTGCAGCGGCAGCAAAGAAGTCTAGGAAGTAG
AA sequence Show only first row Show all	>Lus10006561 pacid=23149188 polypeptide=Lus10006561 locus=Lus10006561.g ID=Lus10006561.BGIv1.0 annot-version=v1.0 MTEVESAAVVQFPAVDTPSKKSAKDKSIKAKKPAAADSKKPRAPRNYPSFQVMISDAIVALKERTGSSQIAITKYIEDNHKNLPPNFRKLLLNQLKRLVA LAELVEVKASRLLLNQLRRLVAAEKLVKVKASFKLPSARSSPTAAPAAKASKKSAVEKPKATKVKAAAAVATTKPKQKAKSAKPTTAVAKPAAKAQSKRK ATDVAAPKLGAKPSKSKKAKTASASVKSPGKKVAAKPKKTVPKPKSVKSPIKKAAAAAKKSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	0	1
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	2.0	0.9068
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	5.5	0.8408
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	6.3	0.8460
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	6.5	0.8468
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	8.4	0.8336
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	10.2	0.8331
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	10.8	0.8431
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	11.6	0.8038
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	12.0	0.8406
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	12.7	0.8309

Compare expression of checked genes

Lus10006561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.