Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08800 209 / 1e-55 Protein of unknown function, DUF593 (.1.2) AT2G30690 126 / 1e-29 Protein of unknown function, DUF593 (.1) AT1G74830 97 / 2e-20 Protein of unknown function, DUF593 (.1) AT1G18990 95 / 5e-20 Protein of unknown function, DUF593 (.1) AT5G16720 94 / 1e-19 Protein of unknown function, DUF593 (.1) AT1G70750 90 / 3e-18 Protein of unknown function, DUF593 (.1) AT5G06560 60 / 5e-09 Protein of unknown function, DUF593 (.1) AT4G13630 58 / 3e-08 Protein of unknown function, DUF593 (.1.2) AT1G04890 54 / 4e-07 Protein of unknown function, DUF593 (.1) AT3G54740 53 / 8e-07 Protein of unknown function, DUF593 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005527 [exp] 1382 / 0 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10014743 [exp] 137 / 3e-33 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10033854 [exp] 137 / 3e-33 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10018782 [exp] 130 / 7e-31 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10024869 [exp] 128 / 4e-30 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 102 / 6e-22 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 90 / 3e-18 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1) Lus10033123 [exp] 90 / 3e-18 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 89 / 7e-18 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012200 [exp] 315 / 3e-93 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 281 / 1e-80 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 246 / 2e-70 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 144 / 3e-35 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 143 / 1e-34 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 99 / 5e-21 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 96 / 6e-20 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 87 / 8e-18 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 86 / 1e-16 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 85 / 1e-16 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10006566 pacid=23149192 polypeptide=Lus10006566 locus=Lus10006566.g ID=Lus10006566.BGIv1.0 annot-version=v1.0 ATGGGAAGCAAGGCGGTTTCGTCCAGTAGGAAGAACCTTGATATCAGATCTGTGTTGGCATCTGCTGTTCTCGAATGGCTCCTGATTTTAATGCTCCTTG TTAACGCCATATTCTCTTACTTGATATCCACGTTTGCTCATTACTGCGGGTTGCAAGCTCCGTGTCCGCTCTGTTCTAGGCTCGATCACATTTTGGGTTC GAGGAAGTTGAAGCACTACTGGGATCTGGTCTGCCGCAACCATAAGCTGGAAATCTCGTCCTTGGTCCTTTGTCATGCTCACGACACTCTCGTAGATGTT CATGGAATGTGCGAAACCTGCCTCTTCTCGTTTGCCACGGCCAACAAGTCCAATGCCGAGACTTACAGGTTGCTGGTGGGCAAGCTGGGCGAAGATTCTG GATTCGGTCATGACGAGGACTGTTCGGCTGGGGGACAAAGTTCCAAGGCGAGGAAATGTTCTTGTTGCAATGAGCCATGTACGTCAAGAGGGGCAGGCAA GAAGTTGATGAAGTTTAAATCAACAGGCTCCGAGGATAGTACTGATGCTGATGTCCCTTTATTCGCTGCTGTAGAACGTGGCCAGGAAAACCCCGGGAGC AGTTGTAGAGCTGTTCCAGCCAGCATTTTTGTGAAGAGCCGCGAGGTTGATCCTCTAGCTCATGTAGAGGTCAATGCTGAAGAAAAAGCACAGGGTTCAG TTCAGGAGGGAGTCAGTGGTTCGGATCATGAATCCCATCCGTTTGTCGCGGACAATTCTGTTGAATATGTTCCATTGGTGCTCCATCTTAGCAGTATTCC TGAACATTCCACTTTGGATGATCCTCTAGCTCACGTTGGGTATACAGAGGTCGATGCAGATTCTGATGCTGAATACGAATCCCACGGTTCAGTGCAGGAG GTTGGTATTAGCGGTTTGGTTCACGAAACTCATCCATTGATAGCAGATGATTCTATTGAACATGAGCTAACTTTGGAGCCCCTAACTCATGTTCGGTATA TTGAAGTGAAGGTTGATTCTGATGCTGAATCTGAAGACCGGATGTCTAACGAGGAGGTTGATGCAAATGTCGCAGCTCATGAAACCCATCCATTAATGGC GGCAAATGTCTCTGTCGAATGTGTGTCAAGAGAGGCATTTGCAGTTGGTCTGTCTGAAGATTCTACTATCTTCGATCCTCCAGCTGATGTTGGGTATGCT CAGGTCAAGGCTTTTTCTGATGCCGAGTCTGAAGACCAGGCTTCTTATGATGGGGATGATGCAGATGCTTCGTCTCACGAAACTCATCCAGCAATGGAGA ATGTTGCTCTTGAACACATTCCATCAAAGCCGGATATTGTCGTTCTAAATGAAGGTGACACAACAAGGAACTTAATGGACCAAGTTATGGAAACTGAGCC TGCTCATGATCTCGAAGAACTCAACTGGCAACGAGCTGAAAAGACAGAGCCCTCTGCAGCACCTGAGCTGATTCCCTTTTACGATGATCCTTCTCCATCC GTTGCCAGTGCGTTGCTTGTAGAGCAGGCAACAGAAGAAGAAGAGGAGGAGGAAGAGGACAAGTTCATTTCCTCAGAAGATGTGCCTCCAGAGTTGAATG AAAGAGAAATCGTCGTGGAAACATCATCCAAAGAGAGCAACTCGATTTTGTTAGACAATGTGGCTTCCCCGTTGGATGACATAGAGACTGTTGTGGAAGC ATTACAAGAGAGCAAGCTTGTCTCCATAGAAAATGAGTCTCCGGCATTGGATCCAACGGACTGTATCTCATCATCGGAAGGGGAGTGTGATGAAAGCGAT GATGGCCTCTCATCATCGGAGGTAGAAACTCCAGTTGAAGGGCTGAAGGAGAACAGTGACACAAGAAAAGAGGATATTTGGGAACCAGCTTCCGAAACAT ATTCCGAAACGAATCATGTTTCAAGTGAGATCAATAGCCCACACTGGCATAATTCATTGGATCTTGGTGATGCCTACAAGCTAGCTGTTGGCAATAAGGG AAGGCATCATCTTTCTGGTGTGCTTTCCGAACAATGGCTTGGCAAGGATTCTTCGAGACTGAGCGAAGATCTGCGGAATTTGGCCTCACATTTATCTGGT GTTCGCGAGCAGTCATTAAGTCCCAGAGTGCCAATGAGTCCCAGAGTACCACCCATGAGCCCTAAACTGTCCATAAACAGCGACGATGCTTCGACCACCA CCGGAGTGCAAATGCTGCAGAAGAGAATGTCGCTCGAGAGAAACGAGTCCGGTCTATCTCTCGATGGAAGCCTCGTCAGCGAAATCGAAGGCGAGAGTTT GGTTGACAGGCTGAAACGACAGGTTGATCACGACAAGAAATTGTTGAATATCCTGTATAAGGAGCTGGAGGAAGAGAGGAACGCTTCGGCCATTGCAGCG AATCAGGCCATGGCTATGATCACTAGATTGCAGGAAGAGAAGGCATCTTTCCAAATGGAAGCCCAGCAGTGCCTGAGGGTGATGGAGGATCAAGCCGAGT ACGACATGGAAGCGTTGCAGAAGATGAACGACCTTCTCGTGGAGAAGGAGAAAGAAATTCAAGATCTCGAAGCTGAACTCGAGTTCTACAGGAATACGTT CCACCCGGATGATGTCGAAAATGCAGGAGTGGATCCAGTTGAAGCTGCAGACTTTGAAGAGCGAAATGGACATAGAAGTTTGAGTGAAGTGAACAAGTCG ATGTCGGAGCTTGAAGATGCGAAATGGTAA
AA sequence Show only first row Show all	>Lus10006566 pacid=23149192 polypeptide=Lus10006566 locus=Lus10006566.g ID=Lus10006566.BGIv1.0 annot-version=v1.0 MGSKAVSSSRKNLDIRSVLASAVLEWLLILMLLVNAIFSYLISTFAHYCGLQAPCPLCSRLDHILGSRKLKHYWDLVCRNHKLEISSLVLCHAHDTLVDV HGMCETCLFSFATANKSNAETYRLLVGKLGEDSGFGHDEDCSAGGQSSKARKCSCCNEPCTSRGAGKKLMKFKSTGSEDSTDADVPLFAAVERGQENPGS SCRAVPASIFVKSREVDPLAHVEVNAEEKAQGSVQEGVSGSDHESHPFVADNSVEYVPLVLHLSSIPEHSTLDDPLAHVGYTEVDADSDAEYESHGSVQE VGISGLVHETHPLIADDSIEHELTLEPLTHVRYIEVKVDSDAESEDRMSNEEVDANVAAHETHPLMAANVSVECVSREAFAVGLSEDSTIFDPPADVGYA QVKAFSDAESEDQASYDGDDADASSHETHPAMENVALEHIPSKPDIVVLNEGDTTRNLMDQVMETEPAHDLEELNWQRAEKTEPSAAPELIPFYDDPSPS VASALLVEQATEEEEEEEEDKFISSEDVPPELNEREIVVETSSKESNSILLDNVASPLDDIETVVEALQESKLVSIENESPALDPTDCISSSEGECDESD DGLSSSEVETPVEGLKENSDTRKEDIWEPASETYSETNHVSSEINSPHWHNSLDLGDAYKLAVGNKGRHHLSGVLSEQWLGKDSSRLSEDLRNLASHLSG VREQSLSPRVPMSPRVPPMSPKLSINSDDASTTTGVQMLQKRMSLERNESGLSLDGSLVSEIEGESLVDRLKRQVDHDKKLLNILYKELEEERNASAIAA NQAMAMITRLQEEKASFQMEAQQCLRVMEDQAEYDMEALQKMNDLLVEKEKEIQDLEAELEFYRNTFHPDDVENAGVDPVEAADFEERNGHRSLSEVNKS MSELEDAKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	2.4	0.8054
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	3.7	0.7916
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	6.9	0.7873
AT5G40450			unknown protein		Lus10001136 [exp]	7.9	0.7458
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	8.9	0.7860
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	10.1	0.7105
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	11.2	0.7593
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	13.9	0.7528
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	14.1	0.7311
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	14.8	0.7858

Compare expression of checked genes

Lus10006566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.